Introduction
EoRNA2 is a Barley Expression Database that displays gene and transcript abundance data on demand as transcripts per million (TPM) across all samples and all the genes in the latest Barley Reference Transcript Dataset (EORNA2RTD). This is an updated and expanded version of EoRNA.
You can access data directly by searching for a particular sequence ID or by BLASTing a nucleotide or protein sequence against the PanGenome20 pseudomolecules or the EORNA2RTD transcript sequences using the BLAST Search page. Alternatively, you can use use keywords to search the functional annotations of the translated proteins of the EoRNA2 transcripts via the Annotation Search page.The data can be downloaded in bulk using the downloads page.
A full list of the RNA-seq studies included in the database are here.
BLAST Search
Use a nucleotide or protein sequence to find similar transcripts or genome sequence with the online BLAST search form.
Search by ID
Search for an ID from one of the 8 included barley transcriptomes or for a probe ID from the barley 50K SNP dataset.
Region Search
Search the genome for regions of interest using a position or a gene ID.
Annotation Search
Search the annotation of the EORNA2RTD transcripts using keywords.
Translate a List
Translate a list genes IDs to the EORNA2RTD IDs based on their overlap on the reference genome.
GO Enrichment
Details of how to do GO enrichment analysis with the EORNA2RTD dataset.
Filter Studies
Input a gene name. Use keywords to filter the included experiments by cultivars, tissues, development stage, experimental conditions, and number of biological reps.
Filter by Study Keywords
Input a gene name. Use keywords to filter the included experiments.
List of all studies included in the database
| Study Accession | Publication title | # Runs | Study keywords | Cultivars | Tissues | Development stages | Experimental Conditions | # Reps |
|---|---|---|---|---|---|---|---|---|
| PRJDB14465 | Organ-enriched gene expression during floral morphogenesis in wild barley | 4 | Development, Inflorescence, Morphology | OUH602 | mature spikelet, shoot apical meristem | awn promodium, double ridge, green anther, vegetative | 1 | |
| PRJDB14466 | Organ-enriched gene expression during floral morphogenesis in wild barley | 7 | Development, Inflorescence, Morphology | OUH602 | anther, awn, glume, lemma, lodicule, palea, pistil | 1 | ||
| PRJDB14939 | Genomic signatures of Japanese malting barley breeding reflected in two modern high-quality cultivars, Sukai Golden and Sachiho Golden | 5 | Diversity, Malting quality | Sachiho Golden, Sukai Golden | seed | 3 | ||
| PRJDB16672 | Hordeum vulgare CYP76M57 catalyzes C(2) shortening of tryptophan side chain by C-N bond rearrangement in gramine biosynthesis | 1 | Fibersnow | leaf | 72 h old | 1 | ||
| PRJDB4103 | Improvement of barley genome annotations by deciphering the Haruna Nijo genome | 4 | Genome annotation | Haruna Nijo | immature seed, immature spike, seedling root, seedling shoot | 35 days after flowering, 5 days before heading, shoots ca. 5cm, shoots ca.5cm | greenhouse 20/15C day night natural light | 1 |
| PRJDB4754 | Extreme suppression of lateral floret development by a single amino acid change in the VRS1 transcription factor | 6 | Lateral floret development | Foma, NGB115174 | immature spike | awn primordium | 3 | |
| PRJDB4919 | A GDSL-motif esterase/acyltransferase/lipase is responsible for leaf water retention in barley | 2 | Mutant, Cuticle, cer-zv | Foma, cer-zv.342 | leaf | seedling having three leaves | hypersensitive to drought, wild type | 1 |
| PRJDB6669 | QTLs maintaining grain fertility under salt stress detected by exome QTL-seq and interval mapping in barley | 2 | Salt | OUC613, OUE812 | shoot and root | seedlings with 5 cm long shoots | salt | 1 |
| PRJDB7665 | Development of Genome-Wide SNP Markers for Barley via Reference- Based RNA-Seq Analysis | 152 | Japanese cultivars, Diversity | Aizu6, Akaginijo, Akashinriki, Amaginijo, Asukagolden, Daishimochi, Dorirumugi, Fibersnow, G-65, Goldenmelon, Gouneshikoku, Haganemugi, Haganemugi2, Hanna, Harrington, Haruhimeboshi, Harukanijo, Harumiyabi, Harushirane, Higashiyamahadaka112, Higashiyamakawa109, Higashiyamakawa113, Higashiyamakawa114, Hinodehadaka, Hokuiku31, Hokuiku41, Hokurikukawa35, Hokurikukawa39, Hokurikukawa48, Hokurikukawa49, Hokurikukawa50, Hokurikukawa51, Hokurikukawa52, Ichibanboshi, Ishukushirazu, K-3, Kantohadaka94, Kantohadaka942, Kantokawa92, Kantokawa93, Kantokawa932, Kantokawa96, Kantokawa962, Kantokawa97, Kantokawa972, Kantokawa98, Kantokawa982, Kantonijo15, Kantonijo25, Kantonijo29, Kantonijo4, KashimaGoal, Kashimamugi, Kiishiminato3, Kikaihadaka, Komakinijo, Kuroshiohadaka, Mannenboshi, Miharugold, Mikamogolden, Mikamogolden2, Minorimugi, Misatogolden, Miyukioomugi, Mona, Musashinomugi, Myoginijo, Nakatehadaka, Nanbuuhadaka, NankeiB4718, Nishinohoshi, Oshimahadaka, Prior, Rokkakusibari, Russia6, Russia73, Ryofu, Sachihogolden, Sainohoshi, Sakitamanijo, Satsukibare, Satsukinijo, Sayakaze, Seijo17, Seikaikawa33, Seikaikawa59, Sekitori, Senbonhadaka, Shikokuhadaka103, Shikokuhadaka83, Shikokuhadaka84, Shiratamahadaka, Shunrai, Shunrei, Silkysnow, Steptoe, Sukaigolden, Suzukaze, Taishomugi, Takahogolden, TanikeiA6054, TanikeiA6055, Tochikei133, Tochikei166, Tochikei216, Tochikei254, Tochinoibuki, Tonenijo, Tsuyushirazu, UkeiB0080, UkeiB0630, Viewfiber, Yokozuna, Yumesakiboshi, Yunagihadaka, Yunagihadaka2 | shoot and root, spike | 5 days before heading, seedlings with 5 cm long shoots, seedlings with 5cm long shoots, seedlings with5 cm long shoots | 1 | |
| PRJEB12101 | Rapid gene isolation in barley and wheat by mutant chromosome sequencing | 1 | Genome annotation | Foma | leaf sheath | flag leaf sheath extending | 1 | |
| PRJEB12540 | Large Differences in Gene Expression Responses to Drought and Heat Stress between Elite Barley Cultivar Scarlett and a Spanish Landrace | 28 | Drought | SBCC073, Scarlett | leaf, young inflorescence | 60 days old | control, drought, greenhouse | 3 |
| PRJEB12639 | Analysis of Plant Pan-Genomes and Transcriptomes with GET_HOMOLOGUES-EST, a Clustering Solution for Sequences of the Same Species | 3 | Landrace | SBCC073 | pooled seedling root, leaf, tiller, inflorescence | mixed | growth chamber 16h light; 21C day/18C night | 3 |
| PRJEB13621 | De novo transcriptome assembly and analysis of differentially expressed genes of two barley genotypes reveal root-zone-specific responses to salt exposure | 48 | Salt | Clipper, Sahara | root elongation zone, root maturation zone, root meristematic zone | 3 day seed germination | 0mM NaCl, 100mM NaCl | 4 |
| PRJEB14349 | A chromosome conformation capture ordered sequence of the barley genome. | 96 | 16 developmental stages | Morex | caryopsis, developing inflorescence, embryo, epidermis, etiolated leaf, internode, leaf, lemma, lodicule, palea, rachis, root, senescing leaf | 10 day old seedling, 10-15mm, 10cm shoot, 15 dpa, 2 months, 4 DPG, 4 week seedling, 4 weeks, 42 days old, 5 dpa, 5 weeks PA, 5mm, 6 weeks PA | 3 | |
| PRJEB18276 | Comparative transcriptomics reveals lineage specific evolution of cold response in Pooideae | 10 | Cold | Igri | leaf | three to four leaves | ind: 8 hours light after cold treatment, ind: 9 weeks after cold treatment, mix: 4 weeks after cold treatment, mix: 8 hours light before cold treatment, mix: 9 weeks after cold treatment, mix: lights on before cold treatment | 3 |
| PRJEB19243 | Barley SIX-ROWED SPIKE3 encodes a putative Jumonji C-type H3K9me2/me3 demethylase that represses lateral spikelet fertility | 32 | Mutant, Spike, vrs3 | BW902, Bowman WT | awn primordium, white anther | 10mm spike, 5mm spike | 9 | |
| PRJEB21740 | A Tandem Amino Acid Residue Motif in Guard Cell SLAC1 Anion Channel of Grasses Allows for the Control of Stomatal Aperture by Nitrate | 3 | Stomatal complexes | Barke | leaf without upper and lower epidermis, stomatal complex, total leaf | 8-10 day old leaf | 1 | |
| PRJEB25923 | The draft genome of a wild barley genotype reveals itsenrichment in genes related to biotic and abiotic stressescompared to cultivated barley | 6 | Wild barley, Development | WB1 spontaneum | kernel, root, seedling leaf, spikelets, stems, whole seedlings | 15 days after planting, 15 days post anthesis, 25 days after planting, 30 days after planting, 42 days after planting, at anthesis | 1 | |
| PRJEB29972 | The contribution of cis- and trans-acting variants to gene regulation in wild and domesticated barley under cold stress and control conditions | 127 | Cold, Hybrids | BCC131_Hybrid, BCC131_Parent, Barke_Hybrid, Barke_Parent, FT11_Hybrid, FT11_Parent, FT279_Hybrid, FT279_Parent, FT581_Hybrid, FT581_Parent, FT67_Hybrid, FT67_Parent, HOR1969_Hybrid, HOR1969_Parent, Igri, Igri_Hybrid, Morex, Morex121, Morex38, Morex68 | leaf | 7 days after planting | , cold treated, control | 5 |
| PRJEB35759 | Light spectra trigger divergent gene expression in barley cultivars | 18 | Light quality | Esterel, Price, WA1614-95 | leaf | 20 days post vernalization | fluorescent light, metal halide light | 3 |
| PRJEB36578 | The barley pan-genome reveals the hidden legacy of mutation breeding | 45 | Genome annotation, Development | Barke, HOR_10350 | caryopsis, embryo, inflorescence, internode, leaf, root | 10cm height, 15 dap, 4 days germination, 42 days old, 5 dap, 5mm | 5 | |
| PRJEB39672 | Transcriptional landscapes of floral meristems in barley | 209 | Floral meristem | Bowman | central spikelet, inflorescence meristem, lateral spikelet, leaf blade, leaf ridge, reference 1/rachis, reference 2/complete spike, root tip, spikelet ridge, vegetative apex | 14 days after sowing, 21 days after germination, 5 days after germination, awn primordium, double ridge, glume primordium, lemma primordium, stamen primordium, triple mound, white anther | , control, low light intensity | 4 |
| PRJEB39864 | Physiological Changes in Barley mlo-11 Powdery Mildew Resistance Conditioned by Tandem Repeat Copy Number | 30 | Disease, Mildew, mlo, NILs | Baudin, Pallas | leaf | third leaf | 48hpi mildew, control | 3 |
| PRJEB40905 | The Effect of Drought on Transcriptome and Hormonal Profiles in Barley Genotypes With Contrasting Drought Tolerance | 12 | Drought | Baronesse, Otis | leaf | youngest fully expanded leaf | 5 days drought, control | 3 |
| PRJEB45617 | Barley guard cell and subsidiary cell specific transcripts | 12 | Epidermis, Guard cells | Barke | leaf guard cells, leaf guard cells subsidiary cells, leaf whole epidermal peel | 8-10 day old | 4 | |
| PRJEB46519 | Transgenic barley lines prove the involvement of TaCBF14 and TaCBF15 in the cold acclimation process and in frost tolerance | 18 | Cold, Transgene, CBF | Golden Promise, Golden Promise (TaCBF14), Golden Promise (TaCBF15) | leaf | 3 week old | 20C/17C, 5C/5C | 3 |
| PRJEB46882 | A unique resistance mechanism is associated with RBgh2 barley powdery mildew adult plant resistance | 71 | Disease, Blumeria graminis | Ba69_106_S, Ba69_109_APR, Ba69_118_S, Ba69_12_APR, Ba69_134_S, Ba69_288_APR, Ba69_304_APR, Ba69_399_S, Ba69_582_S | leaf | sixth leaf | Blumeria graminis 48hpi, control | 4 |
| PRJEB49069 | Genomic resources for a historical collection of cultivated two-row European spring barley genotypes | 1501 | Genome annotation, Diversity | Aapo, Abacus, Abava, Acoustic, Alabama, Alexis, Alliot, Aluminium, Alva, Anais, Annabell, Apex, Appaloosa, Aramir, Armelle, Arvo, Athos, Atlas, Avalon, Avec, Balder, Balder J, Balga, Barke, Baronesse, Beatrix, Beka, Berac, Berenice, Berwick, Betzes, Binder, Binder Abed, Birgitta, Blenheim, Bogart, Bonus, Braemar, Brazil, Britta, Camargue, Campala, Carlsberg, Cellar, Centurion, Century, Chad, Chalice, Chariot, Chaser, Chevalier Tystofte 2, Chieftain, Chime, Cilla, Claret, Class, Cocktail, Colada, Concerto, Cooper, Cork, Corniche, Crusader, Dallas, Dandy, Deba Abed, Decanter, Delibes, Delta, Derkado, Diamant, Digger, Dina, Domen, Drake, Drost, Drum, Egmont, Emir, Fairytale, Favorit, Forensic, Freja, Georgie, Gitane, Golden Promise, Golf, Gull, Gundel, Hart, Hellas, Helmi, Hemingway, Heron, Husky, Husky AFP2429, Imidis, Impala, Infinium, Ingrid, Invictus, Isabella, Isaria, KWS Irina, KWS Orphelia, KWS Vitara, Kassima, Klaxon, Koral, Krystal, Kym, Landlord, Lenta, Livet, Lud, Macaw, Maja, Mala, Maresi, Maris Mink, Maypole, Meltan, Midas, Momentum, Natasha, Natasia, Nomad, Nordal, Novello, Odyssey, Okos, Olympus, Optic, Orbit, Otto, Overture, Paloma, Pewter, Pitcher, Poker, Potter, Power, Prague, Prestige, Prisma, Proctor, Prodigal, Propino, Publican, Quench, RGT Conquest, RGT Planet, Rainbow, Rapid, Reggae, Renaissance, Renata, Rhynchostar, Ria, Rika, Riviera, Romi, Rummy, SW Scania, SY Taberna, SY Universal, Salka, Saloon, Salve, Scandium, Scarlett, Sebastian, Senat, Simba, Simon, Skittle, Spartan, Spey, Spire, Starlight, Static, Steffi, Steina, Stendes, Sultan, Summit, Tankard, Taphouse, Tartan, Tavern, Tennis, Tocada, Tremois, Trinity, Triumph, Troubadour, Tweed, Tyne, Union, Vada, Valticky, Vankkuri, Velvet, Villa, Volla, Waggon, Westminster, Wing, Wisa, Zephyr 2RSB | crown, developing inflorescence, grain, peduncle, root, spikelet | 1 week old, 5 dpa, 85 days old, 90 days old, green anther stage | 4 | |
| PRJEB50400 | Identifying plant genes shaping microbiota composition in the barley rhizosphere | 15 | Rhizosphere | Barke, HEB15_124_17, HEB15_124_52 | root | early stem elongation | 5 | |
| PRJEB51366 | A molecular framework for grain number determination in barley | 66 | Grain development | BW, BW-NIL-tst2.b | anther, apical spike, basal spike, central spike | W8, W9, awn primordium, green anther, white anther | 3 | |
| PRJEB51523 | Multilayered regulation of developmentally programmed pre-anthesis tip degeneration of the barley inflorescence | 54 | Spike development | Bowman, Morex | apical spike, basal spike, central spike | W5, W5.5, W6.5, W7.5, W8.25 | 3 | |
| PRJEB51840 | Silicon mitigates potassium deficiency by enhanced remobilization and modulated potassium transporter regulation | 24 | Potassium, Silicon | Irina | root, shoot | 24 days old | with +K+Si, with +K-Si, with -K+Si, with -K-Si | 3 |
| PRJEB52944 | RNA-seq on touch responses in cereals | 12 | Touch | Morex | second leaf | two leaves visible | 0 min after touch treatment, 1 h after touch treatment, 2 h after touch treatment, 25 min after touch treatment | 3 |
| PRJEB53837 | Conserved signalling components coordinate epidermal patterning and cuticle deposition in barley | 12 | Cuticular wax, Stomata | BW111, BW122, Bowman | basal leaf | 10 day old | 4 | |
| PRJEB60437 | RNA-seq of drought response and drought recovery in barley (cv. Golden Promise) on a lysimeter platform | 15 | Drought, Rewatering | Golden Promise | second leaf | 12 days control, 12 days drought, 12 days rewatering, 41 days control, 41 days drought, 41 days rewatering, 43 days control, 43 days drought, 43 days rewatering | 3 | |
| PRJEB60848 | Multi-omics insights into the positive role of strigolactone perception in barley drought response | 8 | Mutant, Drought, hvd14.d | Sebastian, Sebastian hvd14.d | leaf | 25 days after sowing | drought stress | 4 |
| PRJEB60969 | Multi-omics insights into the positive role of strigolactone perception in barley drought response | 8 | Mutant, Drought, hvd14.d | Sebastian, Sebastian hvd14.d | leaf | 25 days after sowing | control | 4 |
| PRJEB6343 | 18 | Mutant, Laxatum | Bowman, Lax.a | glume, spike meristem, stamen | immature, primodium | 3 | ||
| PRJEB64639 | The barley pan-genome reveals the hidden legacy of mutation breeding | 326 | Genome annotation | Akashinriki, B1K-04-12, Barke, Clipper, Golden Promise, HOR_10350, HOR_13821, HOR_13942, HOR_21599, HOR_3081, HOR_3365, HOR_7552, HOR_8148, HOR_9043, Hockett, Igri, Morex, OUN333, RGT Planet, Stirling, ZDM01467, ZDM02064 | caryopsis, embryo, inflorescence, root, seedling epicotyl | 3 | ||
| PRJEB65284 | Adaptive diversification through structural variation in barley | 18 | Rachilla hair length, srh1 | BW-NIL-srh1, Barke, Bowman, Morex | spikelet rachilla | rachilla hair elongation, rachilla hair initiation | 3 | |
| PRJEB66271 | Drought-induced molecular changes in crown of various barley phytohormone mutants | 139 | Mutant, Drought, hvdwarf14.d | BW827, BW828, BW885, Bowman, Sebastian, Uzu, hvdwarf14.d | crown root | 4 week old | 1 day control, 1 day drought, 10 day control, 10 day drought, 3 day control, 3 day drought | 4 |
| PRJEB7729 | Bacteria-Triggered Systemic Immunity in Barley Is Associated with WRKY and ETHYLENE RESPONSIVE FACTORs But Not with Salicylic Acid | 17 | Disease | Barke | leaf | 3 leaf stage | local Psj, local Xtc, local mock, systemic Psj, systemic Xtc, systemic mock | 3 |
| PRJNA1002593 | Diethyl ether anaesthesia inhibits de-etiolation of barley seedlings by locking them in intermediate skoto-photomorphogenetic state | 20 | Light response, Diethyl ether | Morex | seedling | 7 day old | 6h illuminated control, 6h illuminated etherized, Dark-grown control, Dark-grown etherized | 5 |
| PRJNA1008702 | Heat-stress-responsive HvHSFA2e gene regulates the heat and drought tolerance in barley through modulation of phytohormone and secondary metabolic pathways | 4 | Mutant, Heat stress, HvHSFA2e | Golden Promise | leaf | 5 week old | transgenic HvHSFA2e, wild type | 2 |
| PRJNA1014924 | Comparative transcriptome analysis of major lodging resistant factors in hulless barley | 30 | Lodging | 194, 360 | stem | early stem formation, filling, late flowering, mature, stem formation | 3 | |
| PRJNA1027084 | A splicing site change between exon 5 and 6 of the nuclear-encoded chloroplast-localized HvYGL8 gene results in reduced chlorophyll content and plant height in barley | 6 | Mutant, Leaf colour, YGL8 | Morex, YGL8 | leaf | stem elongation | 3 | |
| PRJNA1029507 | Coordinated Transcriptome and Metabolome Analyses of a Barley hvhggt Mutant Reveal a Critical Role of Tocotrienols in Endosperm Starch Accumulation | 12 | Mutant, Grain starch, hvhggt | Golden Promise | endosperm | 16 dap, 8 dap | mutant hvhggt, wild type | 3 |
| PRJNA188758 | High-throughput transcriptome analysis of barley (Hordeum vulgare) exposed to excessive boron | 4 | Boron | Sahara | leaf, root | 14 day seedlings | 1000uM Boron, 50uM Boron | 1 |
| PRJNA227167 | Transcriptome Assembly and Analysis of Tibetan Hulless Barley (Hordeum vulgare L. var. nudum) Developing Grains, with Emphasis on Quality Properties | 2 | Hulless landraces | Nimubai or XQ754 | grain | Pooled 5, 10, 15, 20, and 25 days after pollination (dap) | 1 | |
| PRJNA253160 | 1 | Hulless landraces | Dulihuang | 6 pooled tissues | pooled seedling, anther, pollen, ovary, and milky seed | 1 | ||
| PRJNA257018 | Direct links between the vernalization response and other key traits of cereal crops | 2 | Vernalization, Transgene, VRS1-HA | Golden Promise | whole seedling minus roots | L2 stage | VRN-HA OE, control | 1 |
| PRJNA261456 | Transcriptome profiling reveals mosaic genomic origins of modern cultivated barley | 21 | Wild barley, Diversity | Alexis, Amagi Nijo, Beiqing, ECI-2-0, ECI-6-0, Esterel, Franka, Himala2, Iran-6-26, Padanggamu, TX9425, Tabigha-B-63, Tabigha-T-0, Turkey-19-24, XZ12, XZ15, XZ174, XZ181, XZ2, XZ21, Yiwuerleng | leaf | 25 days after germination | growth room | 1 |
| PRJNA275710 | Involvement of Alternative Splicing in Barley Seed Germination | 8 | Germinating seed | Bass, Baudin, Harrington, Stirling | germinating embryo | 24h imbibing, 48h imbibing | petri dish | 1 |
| PRJNA292371 | The barley immune receptor Mla recognizes multiple pathogens and contributes to host range dynamics | 2 | Disease | Abed Binder 12, Russell | leaf | first leaf fully expanded; second leaf emerging | 1 | |
| PRJNA294716 | Differential transcriptomic responses to Fusarium graminearum infection in two barley quantitative trait loci associated with Fusarium head blight resistance | 48 | Disease, Fusarium | Lacey and IL, M69 and IL | spike | 2-3 days after their complete emergence from the boot | 48h control, 48hai Fusarium, 96h control, 96hai Fusarium | 3 |
| PRJNA295482 | Deciphering Mineral Homeostasis in Barley Seed Transfer Cells at Transcriptional Level | 15 | Grain transfer cells, Iron | Quench | grain transfer cells | 18 days after anthesis | 24h after foliar application of iron, 24h after foliar application of zinc, 6h after foliar application of iron, 6h after foliar application of zinc, untreated | 3 |
| PRJNA309882 | Genomic adaptation to drought in wild barley is driven by edaphic natural selection at the Tabigha Evolution Slope | 124 | Drought | ECI-2-0-CT, ECI-2-120, ECI-2-122, ECI-2-123, ECI-2-124, ECI-6-0-CT, ECI-6-143, ECI-6-144, ECI-6-146, ECI-6-148, Nure, Tremois, Triumph, ZDM04815, ZDM04817, ZDM04908, ZDM06853, ZDM07571, ZDM07612, ZDM07646, ZDM07648, ZDM07747, ZDM08108, ZDM08141, ZDM08205, ZDM08217, ZDM08841, ZDM08846 | leaf | reproductive, seedling, vegative | , 0 Days recovery from cold, 0 hours cold, 1 Days recovery from cold, 16 hours cold, 3 Days recovery from cold, 6 Days recovery from cold, control, long term mild drought | 3 |
| PRJNA315041 | RNA-seq reveals few differences in resistant and susceptible responses of barley to infection by the spot blotch pathogen Bipolaris sorokiniana | 87 | Disease, Cochliobolus | Morex, Morex MUT | seedling | 14 days until the second leaf was fully expanded | C. sativus 12hpi, C. sativus 24hpi, C. sativus 36hpi, mock control 12h, mock control 24h, mock control 36h | 3 |
| PRJNA316037 | Transcriptome analysis revealed the drought-responsive genes in Tibetan hulless barley | 9 | Drought | Himalaya 10 | leaf | seedling | 15.5% RMSC, 21.1% RSMC, 27.5% RSMC, 2h recovery 4.8-33.4%, 33.4% RSMC, 4.8% RMSC, 4h recovery 4.8-33.4%, 8h recovery 4.8-33.4%, 9.8% RMSC | 1 |
| PRJNA321264 | Comparative Transcriptome Analysis Revealed Genes Commonly Responsive to Varied Nitrate Stress in Leaves of Tibetan Hulless Barley | 8 | Nitrogen | Zangqing 320 | leaf | 2 weeks old | free nitrate 0mM/l, high nitrate 40mM/l, low nitrate 0.04mM/l, optimal nitrate 4mM/l | 2 |
| PRJNA324116 | Heat Stress Affects Pi-related Genes Expression and Inorganic Phosphate Deposition/Accumulation in Barley | 10 | Heat | Rolap | root, shoot | 2 weeks old | control 22C, heat 35.5C | 3 |
| PRJNA324838 | ELIGULUM-A Regulates Lateral Branch and Leaf Development in Barley | 7 | Mutant, Tiller | Bowman, cul2, cul2 rob1 progenitor, eli-a, eli-a rob1 | crown | 14 day | 2 | |
| PRJNA326683 | Generalist and Specialist Mite Herbivores Induce Similar Defense Responses in Maize and Barley but Differ in Susceptibility to Benzoxazinoids | 28 | Spider mite | Morex | leaf | V5-30 days old | infested Banks grass mite 24hr, infested Banks grass mite 2hr, infested two-spotted spider mite 24 hr, infested two-spotted spider mite 2hr, non-infested, wounded 24 hr, wounded 2hr | 4 |
| PRJNA343614 | Comparative transcriptome analysis of barley (Hordeum vulgare L.) glossy mutant using RNA-Seq | 3 | Mutant, Cuticular wax, glossy | Supi 3 | spikes | flower | albino-lemma mutant, control, gloss mutant | 1 |
| PRJNA354889 | Transcriptional Dynamics of Grain Development in Barley (Hordeum vulgare L.) | 8 | Grain development | Clipper | grain | 13 dpa, 18 dpa, 3 dpa, 8 dpa | 2 | |
| PRJNA376252 | The barley immune receptor Mla recognizes multiple pathogens and contributes to host range dynamics | 1 | Disease, Puccinia | Aramir | leaf | first leaf fully exanded, partial second leaf | 12 days infected with Puccinia stiiformis f. sp. hordei isolate B01/2 | 1 |
| PRJNA378334 | The barley immune receptor Mla recognizes multiple pathogens and contributes to host range dynamics | 6 | Disease, Puccinia, Diversity | CI 16147, CI 16153, CIho 4196, Haruna Nijo, Manchuria | leaf | first leaf fully expanded, second leaf emerging | 1 | |
| PRJNA378582 | 24 | Hulless grain, Glucan | RIL | hulless grain | 15d-40d | 1 | ||
| PRJNA378723 | The barley immune receptor Mla recognizes multiple pathogens and contributes to host range dynamics | 55 | Disease, Diversity | BCD12, BCD47, Barke, Baronesse, Betzes, Bowman, CI 16139, Commander, Duplex, Emir, Finniss, Fong Tien, Golden Promise, Grannenlose Zweizeilige, HOR 1428, Heils Franken, Hindmarsh, I 5, Igri, Maritime, Pallas, Q21861, Sultan 5, SusPtrit, WBDC 008, WBDC 013, WBDC 085, WBDC 109, WBDC 110, WBDC 172, WBDC 259 | leaf | first leaf | 2 | |
| PRJNA382490 | Transcriptome of barley under three different heavy metal stress reaction | 36 | Heavy metal, Cadmium | Morex | root, shoot | seedling | cadmium treatment control, cadmium treatment treated, copper treatment control, copper treatment treated, zinc treatment control, zinc treatment treated | 3 |
| PRJNA392197 | Characterization of genome-wide variations induced by gamma-ray radiation in barley using RNA-Seq | 6 | Mutant, Dwarf, Vla-MT | Bowman mutant, Vlamingh mutant, Vlamingh wild type | leaf | 3 leaf, 4 leaf, 5 leaf | 2 | |
| PRJNA400519 | Reference gene selection for quantitative RT-PCR normalisation in barley under low-nitrogen stress, based on RNAseq data | 12 | Nitrogen | BI-04, BI-45 | root, shoot | 4th leaf | 0h after low N, 1h after low N, 24h after low N | 4 |
| PRJNA412872 | Transcriptome reprogramming due to the introduction of a barley telosome into bread wheat affects more barley genes than wheat | 6 | Wheat/barley, 7HL | Betzes | leaf | Zadok 11 (first leaf emerged) | 6 | |
| PRJNA430281 | Molecular Mechanisms of Acclimatization to Phosphorus Starvation and Recovery Underlying Full-Length Transcriptome Profiling in Barley (Hordeum vulgare L.) | 72 | Phosphorus | GN121 low P tolerant, GN42 low P sensitive | leaf, root | Hydroponics: Day 19 post transplant sampling, Hydroponics: Day 22 post transplant sampling, Hydroponics: Day 3 post transplant sampling, Hydroponics: Day 3 post transplant sampling , hydroponics: Day 19 post transplant sampling | low phosphorus, normal phosphorus, recovery with normal phosphorus | 3 |
| PRJNA431836 | WRKY Transcription Factors Associated With NPR1-Mediated Acquired Resistance in Barley Are Potential Resources to Improve Wheat Resistance to Puccinia triticina | 30 | Disease, Pseudomonas, NPR1 | Golden Promise, HvNPR1-KD, wNPR1-OE | leaf | seedling stage | P. syringae DC3000 infiltration, water infiltration control | 7 |
| PRJNA432492 | Subfamily-Specific Specialization of RGH1/MLA Immune Receptors in Wild Barley | 56 | Disease, Mla locus, Diversity | B1K-04-08, B1K-04-13, B1K-05-11, B1K-06-07, B1K-07-02, B1K-11-05, B1K-12-06, B1K-13-01, B1K-15-07, B1K-21-08, B1K-21-11, B1K-21-20, B1K-27-02, B1K-27-11, B1K-28-10, B1K-29-20, B1K-31-01, B1K-32-08, B1K-33-19, B1K-34-04, B1K-35-04, B1K-35-08, B1K-36-05, B1K-39-02, B1K-39-20, B1K-41-03, B1K-49-18, CIho14013 (MLA35-1), HID-104, HID-137, HID-138, HID-140, HID-145, HID-149, HID-160, HID-213, HID-230, HID-302, HID-307, HID-308, HID-310, HID-386, HID-4, HID-53, HID-65, HID-8-1, HP-10-4, HP-15-1, HP-20-1, HP-34-3, IGV 3-009 (MLA9), IGV 3-066 (MLA23), Nigrate (MLA30-1), PI12709 (MLA38-1), RS20-1xKiebitzB (MLA18-2), not collected | leaf | 2 weeks, 2 weeks | 16 to 19 hpi mildew | 1 |
| PRJNA433741 | Barley RNA viromes in six different geographical regions in Korea | 6 | Viromes | Not known | leaf | Early stage | 1 | |
| PRJNA435959 | Transcriptomic reprogramming of barley seminal roots by combined water deficit and salt stress | 31 | Drought, Salt | Scarlett | root | seedling | control 24h, control 6h, drought 24h, drought 6h, salt 24h, salt 6h, salt+drought 24h, salt+drought 6h | 4 |
| PRJNA439267 | Osmotic stress enhances suberization of apoplastic barriers in barley seminal roots: analysis of chemical, transcriptomic and physiological responses | 24 | Root, Drought | Scarlett | root zone A, root zone B, root zone C | 2 leaf stage -12d | control, water deficit 0.8 MPa PEG 8000 | 4 |
| PRJNA471777 | Gene coexpression network analysis combined with metabonomics reveals the resistance responses to powdery mildew in Tibetan hulless barley | 30 | Disease, Mildew, Diversity, Hulless | Qingke G7 resistant, Qingke Z13 sensitive | leaf | 5 leaves stage | Blumeria graminis 0hpi, Blumeria graminis 168hpi, Blumeria graminis 36hpi, Blumeria graminis 6hpi, Blumeria graminis 72hpi | 3 |
| PRJNA482688 | Laser-Capture Microdissection RNA-Sequencing for Spatial and Temporal Tissue-Specific Gene Expression Analysis in Plants | 60 | Germinating seed, Development | WI4330 | embryonic plumule, embryonic radicle, embryonic scutellum | germinating seed 0h, germinating seed 16h, germinating seed 24h, germinating seed 32h, germinating seed 40h, germinating seed 48h, germinating seed 8h | 0h post germination, 16h post germination, 24h post germination, 32h post germination, 40h post germination, 48h post germination, 8h post germination | 3 |
| PRJNA489775 | Emerging crosstalk between two signaling pathways coordinates K+ and Na+ homeostasis in the halophyte Hordeum brevisubulatum | 12 | Salt | Zhongsi No.1 | root | 21 day plants | 1 h 350mM NaCl, 24 h 350mM NaCl, 6 h 350mM NaCl, control | 3 |
| PRJNA491382 | Evolutionary Conservation of ABA Signaling for Stomatal Closure | 4 | Drought, Wild barley | H. spontaneum X5, H. spontaneum X54 | leaf epidermis | seedling | control, drought | 1 |
| PRJNA492913 | The fungal root endophyte Serendipita vermifera displays inter-kingdom synergistic beneficial effects with the microbiota in Arabidopsis thaliana and barley | 72 | Disease, Biocontrol, Sebacina & Bipolaris | Golden Promise | root | 7 days old seedlings | Localised Bipolaris sorokiniana 6dpi, Localised Bs + Systemic Sv 6 pdi, Localised Sebacina vermifera 6 dpi, Localised Sv + Localised Bs 6 pdi, Localised Sv + Systemic Bs 6 pdi, Systemic Bipolaris sorokiniana 6dpi, Systemic Sebacina vermifera 6 pdi, control | 3 |
| PRJNA507455 | Adaptive signals of flowering time pathways in wild barley from Israel over 28 generations | 42 | Wild barley, Diversity | Biet Shean, Eyzariya, Mehola, Mt. Hermon, Rosh Pinna, Sede Boqer, Tabigha basalt, Tabigha terra rosa, Talpiyyot, Wadi Qilt | leaf | Zadoks Z15 | 1 | |
| PRJNA514114 | Bulked segregant RNA-sequencing (BSR-seq) identified a novel rare allele of eIF4E effective against multiple isolates of BaYMV/BaMMV. | 2 | Disease, Yellow mosaic virus, Diversity | HOR3298xW757/612 | leaf | seedling | resistant bulk (16 F2)to BaYMV, susceptible bulk (16 F2) to BaYMV | 1 |
| PRJNA534414 | Transcriptomic and presence/absence variation in the barley genome assessed from multi-tissue mRNA sequencing and their power to predict phenotypic traits | 48 | Disease, Yellow mosaic virus, Diversity | Ancap2, CM67, Georgie, HOR12830, HOR1842, HOR383, HOR7985, HOR8160, IG128104, IG128216, IG31424, ItuNative, K10693, K10877, Kharsila, Kombyne, Lakhan, Namhaebori, Sissy, SprattArcher, Unumli-Arpa, W23829/803911 | apex, leaf, seedling | 2 months, 5 days, flag leaf | 1 | |
| PRJNA541021 | Validation and delineation of a locus conferring Fusarium crown rot resistance on 1HL in barley by analysing transcriptomes from multiple pairs of near isogenic lines | 36 | Disease, Fusarium | Awcs079/Awcs276 1, Awcs079/Awcs276 10, Awcs079/Awcs276 11, Awcs079/Awcs276 12, Awcs079/Awcs276 13, Awcs079/Awcs276 14, Awcs079/Awcs276 15, Awcs079/Awcs276 16, Awcs079/Awcs276 17, Awcs079/Awcs276 18, Awcs079/Awcs276 19, Awcs079/Awcs276 2, Awcs079/Awcs276 20, Awcs079/Awcs276 21, Awcs079/Awcs276 22, Awcs079/Awcs276 23, Awcs079/Awcs276 24, Awcs079/Awcs276 25, Awcs079/Awcs276 26, Awcs079/Awcs276 27, Awcs079/Awcs276 28, Awcs079/Awcs276 29, Awcs079/Awcs276 3, Awcs079/Awcs276 30, Awcs079/Awcs276 31, Awcs079/Awcs276 32, Awcs079/Awcs276 33, Awcs079/Awcs276 34, Awcs079/Awcs276 35, Awcs079/Awcs276 36, Awcs079/Awcs276 4, Awcs079/Awcs276 5, Awcs079/Awcs276 6, Awcs079/Awcs276 7, Awcs079/Awcs276 8, Awcs079/Awcs276 9 | stem | seedling | resistant control, resistant infected, susceptible control, susceptible infected | 3 |
| PRJNA543133 | 72 | Diversity, Germination rates | 10/71-10, 1225A, 16, 16/72, 3887, A HOR 1392/58, A HOR 1883/60, ANTARCTICA 06, AUKSINIAJ II, Aigangi, Awnless 5067, BARGIERS, BELADI 2, BR57-754, Belownee, Bon Rudin, C45-10, CIho 1326, CIho 3551, CIho 4208, CIho 6195, CIho 6493, CIho 9955, CNC 201574, CRIOLLA NEGRA, California Mariout, Carmen, Coho, Criolla, DELHI, DZAU-BAPUST MESTNYJ, Featherstone, GAW 89-11, Gem, Giazinskij 395, H HOR 3341/65, HANFUL, HAUTERS PFALZER, Hadaka Mugi, Helena, Junior, KOREKE, Klages, Liland, Line 387, Malteria Heda, Marylin, N14, NUDO BIANCO, NUTANS 45, OSIJESKI 20, Orzo Vulcano 1921, PGR 7393, PI 277387, PI 283439, PI 321842, PI 327685, PI 344914, PI 344918, PI 447100, PI 447207, SEVANNECK, SUVENIR, Sophie, TENDJU-DSHERE, TR212, Tacheng Damai, Ungarn, Ungarn 40, Variegated | 2 cm of stem and leaf from root collar | 3-leaf stage | 1 | ||
| PRJNA543388 | Seminal roots of wild and cultivated barley differentially respond to osmotic stress in gene expression, suberization, and hydraulic conductivity | 24 | Drought | ICB181243 | seminal root control zone A1, seminal root control zone A2, seminal root control zone A3, seminal root control zone A4, seminal root control zone B1, seminal root control zone B2, seminal root control zone B3, seminal root control zone B4, seminal root control zone C1, seminal root control zone C2, seminal root control zone C3, seminal root control zone C4, seminal root stress -0.8 MPa Zone A1, seminal root stress -0.8 MPa Zone A2, seminal root stress -0.8 MPa Zone A3, seminal root stress -0.8 MPa Zone A4, seminal root stress -0.8 MPa Zone B1, seminal root stress -0.8 MPa Zone B2, seminal root stress -0.8 MPa Zone B3, seminal root stress -0.8 MPa Zone B4, seminal root stress -0.8 MPa Zone C1, seminal root stress -0.8 MPa Zone C2, seminal root stress -0.8 MPa Zone C3, seminal root stress -0.8 MPa Zone C4 | 12-day-old seminal roots | control, osmotic stress | 4 |
| PRJNA544271 | 144 | Diversity, Germination after long term storage | ANTARCTICA 06, BARGIERS, Carmen, DZAU-BAPUST MESTNYJ, GATAMI, Giazinskij 395, Helena, PI 321842, PI 344914 | 2 cm of stem and leaf from root collar | 3-leaf stage | stored 10 yrs after seed regeneration, stored 13 yrs after seed regeneration, stored 19 yrs after seed regeneration, stored 25 yrs after seed regeneration, stored 30 yrs after seed regeneration, stored 32 yrs after seed regeneration, stored 37 yrs after seed regeneration | 9 | |
| PRJNA546269 | Transcriptomic and alternative splicing analyses reveal mechanisms of the difference in salt tolerance between barley and rice | 12 | Salt | XZ26 | root, shoot | 7 days old seedlings | control, salt stress | 3 |
| PRJNA558196 | Time-resolved transcriptome of barley anthers and meiocytes reveals robust and largely stable gene expression changes at meiosis entry | 18 | Anther | Golden Promise | anther, meiocyte | 0.3-0.4 mm anthers, 0.5-0.9 mm anthers, 1.0-1.2 mm anthers, 1.3-1.4 mm anthers | 3 | |
| PRJNA558703 | Identification and characterization of mRNAs and lncRNAs of a barley shrunken endosperm mutant using RNA-seq | 24 | Mutant, Shrunken endosperm, sex1 | Bowman, sex1 | grain | 10 daf, 15 daf, 20 daf | 2 | |
| PRJNA563590 | Validation of barley 2OGO gene as a functional orthologue of Arabidopsis DMR6 gene in Fusarium head blight susceptibility | 1 | Genome annotation | Conlon | leaf | 4 weeks old post germination | 1 | |
| PRJNA566107 | Novel low-nitrogen stress-responsive long non-coding RNAs (lncRNA) in barley landrace B968 (Liuzhutouzidamai) at seedling stage | 3 | Nitrogen | B968 | leaf | 3-leaf stage | low nitrogen, normal nitrogen | 2 |
| PRJNA578897 | Integrative Transcriptomic and Proteomic Analyses of Molecular Mechanism Responding to Salt Stress during Seed Germination in Hulless Barley | 30 | Salt, Germination | A (lk621 or lk573), B (lk621 or lk573) | seed | 0h germination, 16h germination, 4h germination | control 0h, control 16h, control 4h, salt stress 16h, salt stress 4h | 3 |
| PRJNA589222 | ENHANCED GRAVITROPISM 2 encodes a STERILE ALPHA MOTIF -containing protein that controls root growth angle in barley and wheat | 24 | Mutant, Root, egt2 | Morex, egt2 | root cap, root elongation zone, root meristem | 3 days | 4 | |
| PRJNA593943 | Time-resolved transcriptome of barley anthers and meiocytes reveals robust and largely stable gene expression changes at meiosis entry | 4 | Germination, Embryo | Golden Promise | embryo | germinating embryo | petri dish | 4 |
| PRJNA602700 | Genome-Wide Analysis of Gene Expression Provides New Insights into Waterlogging Responses in Barley (Hordeum vulgare L.). | 32 | Waterlogging | Deder2, Yerong | root | two-week old seedling | control 0h, control 120h, control 72h, waterlogged 120h, waterlogged 72h | 4 |
| PRJNA603008 | Mildew Locus O facilitates colonization by arbuscular mycorrhiza in angiosperms | 24 | Disease, Rhizophagus, mlo | Ingrid Hvmlo1-5, Ingrid wild type | root | 17dpi, 26dpi | control, mycorrhizal | 3 |
| PRJNA607208 | Pi-starvation induced transcriptional changes in barley revealed by a comprehensive RNA-Seq and degradome analyses | 6 | Phosphorus | Rolap | root and shoot | 23 days old | low Pi, sufficient Pi | 3 |
| PRJNA607428 | Rapid Generation and Analysis of a Barley Doubled Haploid Line with Higher Nitrogen Use Efficiency Than Parental Lines by F1 Microspore Embryogenesis | 18 | Nitrogen | BI04, BI045 doubled haploid, BI28 | leaf | seedlings | control, low nitrogen | 3 |
| PRJNA612176 | Overexpression of wheat transcription factor (TaHsfA6b) provides thermotolerance in barley | 4 | Heat, Transgene, TaHsfA6b | Golden Promise | leaf | tillering | control, transgenic TaHsfA6b | 2 |
| PRJNA623643 | A CYC/TB1-type TCP transcription factor controls spikelet meristem identity in barley | 6 | Mutant, Spike, bdi1 | Aug-49, bdi1 | spike | young spike | 3 | |
| PRJNA629999 | Molecular evidence for adaptive evolution of drought tolerance in wild cereals | 132 | Drought, Wild barley, Diversity | 114, 115, 118, 119, 120, 121, 122, 123, 124, 126, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 181, 35 | leaf | tillering | control, drought | 3 |
| PRJNA639036 | Stem lodging resistance in hulless barley: Transcriptome and metabolome analysis of lignin biosynthesis pathways in contrasting genotypes | 28 | Lodging, Wild barley, Diversity | 12-10556, 13-5171-7, 13-6927, KunLin14, ZDM0260, ZDM0398, ZDM0570, ZDM0674, ZQ690, Zangquing 85 | node | booting stage | S1 lodging sensitive, S2 lodging sensitive, S3 lodging sensitive, S4 lodging sensitive, S5 lodging sensitive, T1 lodging resistant, T2 lodging resistant, T3 lodging resistant, T4 lodging resistant, T5 lodging resistant | 3 |
| PRJNA639318 | The genome and gene editing system of sea barleygrass provide a novel platform for cereal domestication and stress tolerance studies | 18 | Salt | Morex | root, shoot | 150mM NaCl, 300mM NaCl, control | 3 | |
| PRJNA642324 | Comparative Analysis of Morphology, Photosynthetic Physiology, and Transcriptome Between Diploid and Tetraploid Barley Derived From Microspore Culture | 6 | Polyploid | H30, H30 | shoot | two-leaf stage | doubled haploid, tetraploid | 3 |
| PRJNA658250 | MADS1 maintains barley spike morphology at high ambient temperatures | 24 | Heat, Mutant, MADS1 | Golden Promise, MADS1 mutant | awn primordium, triple mound | mature | 15C, 25C | 3 |
| PRJNA661163 | Genome-wide identification of sucrose nonfermenting-1-related protein kinase (SnRK) genes in barley and RNA-seq analyses of their expression in response to ABA treatment | 24 | ABA, Roots | Morex | root | three-leaf | ABA 1h, ABA 24h, ABA 3h, ABA 6h, control 1h, control 24h, control 3h, control 6h | 3 |
| PRJNA665933 | Multi-Omics Analysis Reveals the Mechanism Underlying the Edaphic Adaptation in Wild Barley at Evolution Slope (Tabigha) | 60 | Soil adaptation | Basalt59, Basalt60, Basalt63, Basalt76, Basalt99, Terra Rossa109, Terra Rossa110, Terra Rossa161, Terra Rossa166, Terra Rossa169 | leaf, root | 3 leaf | 3 | |
| PRJNA668924 | INTERMEDIUM-M encodes an HvAP2L-H5 ortholog and is required for inflorescence indeterminacy and spikelet determinacy in barley | 33 | Inflorescence, Mutant, int-m/dub1 | Bowman, int-m.1a NIL, int-m.85 NIL | spike | stamen primordium, double ridge, triple mound-spikelet meristem | 4 | |
| PRJNA679445 | Cuticular transpiration is not affected by enhanced wax and cutin amounts in response to osmotic stress in barley | 16 | Osmotic stress | ICB181243, Scarlett | leaf | 14 days | control, osmotic stress -0.8 MPa | 4 |
| PRJNA681455 | Phytohormonal and Transcriptomic Response of Hulless Barley Leaf in Response to Powdery Mildew Infection | 30 | Disease, Mildew, Hulless | Xila 19 (susceptible), ZYM1288 (resistant) | leaf | 2 leaf stage seedling | 0 hpi, 12 hpi, 24 hpi, 36 hp, 36 hpi, 5 hpi | 3 |
| PRJNA681487 | Transcriptome profiling analysis reveals involvement of SAM cycle and methionine pathway in low potassium tolerance in barley | 24 | Potassium | XZ153 (tolerant), ZD9 (sensitive) | leaf | 15 days old | 1mM, low K (0.01mM) | 3 |
| PRJNA694675 | Identification of regulatory factors promoting embryogenic callus formation in barley through transcriptome analysis | 15 | Callus formation, Embryo | Golden Promise | immature embryo, mature embryo | 14 days post-pollination, mature embryo | 0h on callus-inducing medium, 24h on callus-inducing medium, 48h on callus-inducing medium | 3 |
| PRJNA704034 | Aluminum or Low pH - Which Is the Bigger Enemy of Barley? Transcriptome Analysis of Barley Root Meristem Under Al and Low pH Stress | 18 | Aluminium, pH | Sebastian | root meristem | 7 days old | pH4 24h, pH4, Al treatment 24h, pH4, Al treatment 7d, pH6 24h, pH6 7d, ph4 7d | 3 |
| PRJNA722039 | Genome-wide identification and characterization of Long Non-Coding RNA in barley roots in response to Piriformospora indica colonization | 9 | Disease, Piriformospora | Spring barley | root | 3 weeks in petri dish 1/2 MS medium | 3 DAI, 7 DAI, control | 3 |
| PRJNA728113 | Transcriptome Alterations of an in vitro-Selected, Moderately Resistant, Two-Row Malting Barley in Response to 3ADON, 15ADON, and NIV Chemotypes of Fusarium graminearum | 48 | Disease, Fusarium, Mycotoxin | CDC Kendall, Norman | grain | growth cabinet | F. graminearum 15ADON 72h, F. graminearum 15ADON 96h, F. graminearum 3ADON 72h, F. graminearum 3ADON 96h, F. graminearum NIV 72h, F. graminearum NIV 96h, control 72h, control 96h | 3 |
| PRJNA731362 | The barley leaf rust resistance gene Rph3 encodes a predicted membrane protein and is induced upon infection by avirulent pathotypes of Puccinia hordei | 12 | Disease, Puccinia | BW746, Bowman | leaf | first leaf, fully expanded | Puccinia, 2 dpi, control 2 dpi | 3 |
| PRJNA744021 | Transcriptome and Metabolite Insights into Domestication Process of Cultivated Barley in China | 29 | Wild barley, Diversity | Aibaiyang, Beimai no.4, Cixiyiyeqi, Feite210, HS100, HS101, HS102, HS103, HS104, HS105, HS106, HS107, HS108, HS109, HS18, HS23, HS26, HS30, HS31, HS38, HS39, HS56, HS7, Hamidamai, Huangqingke, Jinxingdamai, Zhenongda no.2, Zhenongda no.3, Zhijiangheshangtou | leaf | seedling | 1 | |
| PRJNA744693 | Cultivar-, stress duration- and leaf age-specific hub genes and co-expression networks responding to waterlogging in barley | 48 | Waterlogging | Evergreen (tolerant), Laurikka (sensitive) | mature leaf, young leaf | early tillering stage T1, tillering stage T2 | 57 day controlled, 6 day waterlogged, 63 day control | 3 |
| PRJNA746688 | Excess nitrogen responsive HvMADS27 transcription factor controls barley root architecture by regulating abscisic acid level | 18 | Nitrogen | Golden Promise, Golden Promise MADS27kd, Golden Promise MADS27ox | root | seedling | control, high N | 3 |
| PRJNA749617 | Comparative transcriptome analysis reveals compatible and recalcitrant genotypic response of barley microspore-derived embryogenic callus toward Agrobacterium infection | 45 | Agrobacterium | GanPi6 (compatible), Hong99 (recalcitrant), L07 (compatible) | microspore-derived embryogenic callus | 0hpi LBA4404, 12hpi LBA4404, 24hpi LBA4404, 2hpi LBA4404, 6hpi LBA4404 | 3 | |
| PRJNA752285 | Highly Conserved Evolution of Aquaporin PIPs and TIPs Confers Their Crucial Contribution to Flowering Process in Plants | 29 | Floret opening | Hu 1154 | anther, glume, leaf, lodicule, pistil, rachis, root, stem | flowering stage, stage 1 of glume opening and closing, stage 2 of glume opening and closing, stage 3 of glume opening and closing, stage 4 of glume opening and closing, stage 5 of glume opening and closing, stage 6 of glume opening and closing | 3 | |
| PRJNA755156 | BaRTv2: a highly resolved barley reference transcriptome for accurate transcript?specific RNA?seq quantification | 20 | Genome annotation | Barke | 3rd stem internode, coleoptile, embryo, etiolated leaf, grain, inflorescence, leaf, lemma, lodicule, palea, peduncle, rachis, root, roots, seedling, shoot apex | , 14 day, 15dpa, 23 day, 35 day, 50 day, 55 day, 5dpa, 6 day | , Rhyncosporium infected, cold stress, heat stress, salt stress | 1 |
| PRJNA764780 | Transcriptome Profiling of Barley Cultivar Hua 30 MDEC in Response to Agrobacterium Infection | 15 | Agrobacterium | Hua 30 | microspore-derived embryogenic calli | 21 day | 0h LBA4404, 0h LBA4405, 0h LBA4406, 12h LBA4404, 24h LBA4404, 2h LBA4404, 6h LBA4404 | 3 |
| PRJNA768999 | Barley resistance gene sequence capture with and without Rhopalosiphum padi rearing | 21 | 142-31, 142-93, 252-33, 252-61, Barke, Hsp, Lina | leaf | 14 days | control | 3 | |
| PRJNA771492 | Phenotypic and transcriptomic characterization of an ABA-sensitive mutant generated by microspore embryogenesis in barley | 12 | ABA, Mutant, abas1 | Hua 30, abas1 (ABA sensitive) | leaf | two-leaf stage old hydroponically grown seedlings | 75 micromoles/L ABA 7d, control | 3 |
| PRJNA777659 | Combined RNA-seq and Phenotype Analysis Reveals a Potential Molecular Mechanism of the Difference in Grain Size of Naked Barley From the Qinghai -Tibetan Plateau | 24 | Grain size | Beiqing 3 (large grain), Line 3,917 (small grain) | kernel | 15-days after flowering, 22-days after flowering, 4-days after flowering, 8-days after flowering | 15DAF, 22DAF, 4DAF, 8DAF | 3 |
| PRJNA781996 | Physiological and Transcriptome Indicators of Salt Tolerance in Wild and Cultivated Barley | 8 | Salt | Mona, spontaneum a salt-tolerant genotype, no. 395 | leaf | productive | 300 mM salt stress, control | 2 |
| PRJNA792270 | A Survey Using High-Throughput Sequencing Suggests That the Diversity of Cereal and Barley Yellow Dwarf Viruses Is Underestimated | 8 | Viriome, BYDV evolution | Laureate, Smooth | leaf | 8 week old plants | BYDV-PAS & BYDV-PAV | 5 |
| PRJNA797690 | Integrative metabolomic and transcriptomic analyses reveal the mechanisms of Tibetan hulless barley grain coloration | 27 | Grain coloration | Zang 0119, Zang 0123, Zang 0131 | seed | grain color-changing, grain developmental, mature grain | 3 | |
| PRJNA810255 | Plastidic G6PDH and root structure regulation are essential for high nitrogen use efficiency in highland barley adaptation to low nitrogen | 12 | Nitrogen | Qinghai-Tibet Plateau, loess Plateau | root | 10 days old | control, low N | 3 |
| PRJNA812745 | Comparative transcriptomic and epigenetic analyses reveal conserved and divergent regulatory pathways in barley response to temperature stresses | 18 | Cold, Heat | E-pi 2 | shoot | seedling | 14C for 24 hours, 14C for 48 hours, 22C for 24 hours, 22C for 48 hours, 38C for 24 hours, 38C for 48 hours | 3 |
| PRJNA815889 | Genome-wide identification of WD40 transcription factors and their regulation of the MYB-bHLH-WD40 (MBW) complex related to anthocyanin synthesis in Qingke (Hordeum vulgare L. var. nudum Hook. f.) | 18 | Grain coloration | Kunlun10, Nierumuzha | seedcoat | 3 | ||
| PRJNA832317 | Comparative Analysis of Transcriptome Profiles Reveals the Mechanisms in the Difference of Low Potassium Tolerance among Cultivated and Tibetan Wild Barleys | 36 | Potassium | XZ141 (low K sensitive), XZ153 (low K tolerant), ZD9 (low K sensitive) | shoot | seedling | 0.01 mM K (low K) for 15d, 0.01 mM K (low K) for 48h, 1.0 mM K (control) for 15d, 1.0 mM K (control) for 48h | 3 |
| PRJNA849931 | Chloroplast activity provides in vitro regeneration capability in contrasting cultivars | 4 | Regeneration efficiency, Callus | DWRB91, Golden Promise | callus | 31 day old | 2 | |
| PRJNA852375 | 12 | Disease, Barley stripe virus | Kunlun14, Z1141 | leaf | normal leaf, sick leaf (leaf stripe) | 3 | ||
| PRJNA852376 | SWEET11b transports both sugar and cytokinin in developing barley grains | 18 | Transgenic, SWEET11b | Golden Promise, Golden Promise SWEET11b RNAi | grain | 12 day, 18 day, 6 day | 3 | |
| PRJNA861888 | Characterization of Glossy Spike Mutants and Identification of Candidate Genes Regulating Cuticular Wax Synthesis in Barley (Hordeum vulgare L.) | 6 | Mutant, Cuticular wax, Cer-GN1 | 08-DM042, 08-DM042 Cer-GN1 | spike | heading | 3 | |
| PRJNA863083 | Barley Ror1 encodes a class XI myosin required for mlo-based broad-spectrum resistance to the fungal powdery mildew pathogen | 7 | Disease, Mildew | Ingrid | leaf | 0h infection B. hordei isolate K1, 18h infection B. hordei isolate K1, 6h infection B. hordei isolate K1, noninfected | 2 | |
| PRJNA866193 | Integrated GWAS and transcriptomic analysis reveal the candidate salt-responding genes regulating Na+/K+ balance in barley (Hordeum vulgare L.) | 12 | Salt | CM72 | leaf | seedling | 0h 300 mM salt, 12h 300 mM salt, 3h 300 mM salt, 48h 300 mM salt | 3 |
| PRJNA875119 | Transcriptomic changes in barley leaves induced by alcohol ethoxylates indicate potential pathways of surfactant detoxification. | 12 | Surfactant response | BrijL4 1, BrijL4 2, BrijL4 3, BrijL4 4, C12E4 1, C12E4 2, C12E4 3, C12E4 4, Control 1, Control 2, Control 3, Control 4 | leaf | 14days | control, spray BrijL4 0.1%, spray C12E4 0.1% | 4 |
| PRJNA877794 | Role of reactive oxygen species in lesion mimic formation and conferred basal resistance to Fusarium graminearum in barley lesion mimic mutant 5386 | 6 | Disease, Mutant, Hypersensitive response, Fusarium | Tamalpais, Tamalpais (lesion mimic mutant 5368) | flag leaf | 3 | ||
| PRJNA878682 | Barley FASCIATED EAR genes determine inflorescence meristem size and yield traits | 12 | Mutant, Inflorescence | Golden Promise, Golden Promise mutant | inflorescence | W2.0, W3.5 | 3 | |
| PRJNA886698 | Nutrient regulation of lipochitooligosaccharide recognition in plants via NSP1 and NSP2 | 42 | Phosphorus, Nitrogen | Golden Promise GP, Golden Promise MtNSP1ox, Golden Promise MtNSP2ox, Golden Promise nsp1, Golden Promise nsp2 | whole root | with +P+N, with +P-N, with -P+N, with -P-N | 3 | |
| PRJNA888435 | 18 | Drought | Hulless barley (drought resistant), Hulless barley (drought sensitive) | 4 h drought, 48 h drought, 48h drought, 4h drought, control | 3 | |||
| PRJNA889532 | Transcriptome analysis of barley (Hordeum vulgare L.) under waterlogging stress, and overexpression of the HvADH4 gene confers waterlogging tolerance in transgenic Arabidopsis | 18 | Waterlogging | Franklin, TX9425 | root | 4 leaf stage | 24h waterlogging, 72h waterlogging, control | 3 |
| PRJNA890449 | Isolation and characterization of the gene HvFAR1 encoding acyl-CoA reductase from the cer-za.227 mutant of barley (Hordeum vulgare) and analysis of the cuticular barrier functions | 12 | Mutant, Cuticular wax | Bonus, Bowman, Foma | leaf | 14 day old | Allele 1 M1, Allele 1 M2, Allele 2 M1, Allele 2 M2, Allele 3 M1, Allele 3 M2, WT mutant 1 (WT-M1), WT mutant 1 (WT-M2), control | 2 |
| PRJNA892763 | Integrated GWAS and transcriptomic analysis reveal the candidate salt-responding genes regulating Na+/K+ balance in barley (Hordeum vulgare L.) | 12 | Salt | Gairdner | leaf | seedling | 12h 300mM salt, 48h 300mM salt, 4h 300mM salt, control | 3 |
| PRJNA896249 | Transcriptome and Metabolome Reveal the Molecular Mechanism of Barley Genotypes Underlying the Response to Low Nitrogen and Resupply | 72 | Nitrogen | W20, W26 | leaf, root | 18 day seedling, 21 day seedling, 3 day seedling | control, low N (0.4mM), normal N (2mM) | 3 |
| PRJNA902282 | Response of salt stress resistance in highland barley (Hordeum vulgare L. var. nudum) through phenylpropane metabolic pathway | 17 | Salt | Highland barley | seedling | seedling | 1 day 240mM salt spray, 3 day 240mM salt spray, 5 day 240mM salt spray, 7 day 240mM salt spray, control 3 day, control 5 day | 4 |
| PRJNA906074 | Transcriptional Signatures in Contrasting Cultivars of Barley During Early Reproductive Development of Meristem | 4 | Development, Meristem | Golden Promise, RD2715 | meristem | double ridge early spike | 2 | |
| PRJNA908121 | The responses of two highland barley cultivars, ES (a variety sensitive to dark-induced leaf yellowing) and LS (a variety tolerant to dark-induced leaf yellowing), to dark-induced leaf senescence | 18 | Dark-induced, Leaf senescence | Dulihuang, Kunlun-12 | leaf | 12 days old | dark induced 0 day, dark induced 3 day, dark induced 6 day | 3 |
| PRJNA910827 | 3 | Pollen, Stigma | Morex | stigma | 3 | |||
| PRJNA922199 | Fine mapping of a Fusarium crown rot resistant locus on chromosome arm 6HL in barley by exploiting near isogenic lines, transcriptome profiling, and a large near isogenic line-derived population | 34 | Disease, Fusarium | 6H_NIL1 resistant isoline, 6H_NIL1 susceptible isoline, 6H_NIL2 resistant isoline, 6H_NIL2 susceptible isoline, 6H_NIL3 resistant isoline, 6H_NIL3 susceptible isoline | stem | seedling | 4dpi fusarium, control | 3 |
| PRJNA924522 | A pathogen-induced putative NAC transcription factor mediates leaf rust resistance in barley | 36 | Disease, Puccinia | BW758, Bowman, Cebada capa | leaf | seedling | 24 h control, 24 h dpi Puccinia hordei, 6 day control, 6 days dpi Puccinia hordei | 3 |
| PRJNA932465 | Barley RNA-seq reads and Ribo-seq reads under normal nitrogen supply and low nitrogen stress | 12 | Nitrogen | B016, B068 | leaf | seedling | control, low N | 3 |
| PRJNA934830 | Genome-wide association mapping and transcriptomic analysis reveal key drought-responding genes in barley seedlings | 12 | Drought | BCS24, BCS8 | leaf | second fully expanded leaves | 7 days drought, control | 3 |
| PRJNA938131 | Molecular insights into the responses of barley to yellow mosaic disease through transcriptome analysis | 18 | Disease, BaMMV | Dan 2, Nongke 1?6, Zaoshu 3 | leaf | BaMMV-infected leaves, BaYMV and BaMMV-infected leaves, non-infected leaves, resistant leaves | 3 | |
| PRJNA944156 | Core promoterome of barley embryo | 6 | Development, Embryo | Morex | embryo | 24 dap, 4 dag, 8 dap | 2 | |
| PRJNA946963 | Transcriptome profiling of barley in response to mineral and organic fertilizers | 5 | Nitrogen | Anni | leaf | 10 t per hectare organic N, 40 kg per hectare mineral N, 80 kg per hectare mineral N, control mineral N, control organic N | 1 | |
| PRJNA961215 | Transcriptome sequencing and analysis of hulless barley cultivars (Hordeum vulgare L.) differing distinctly in beta-glucan content | 18 | Grain starch, Hulless | Gan Ken 5, Yan Shi Luo 1, Zang Qing 25 | grain | 21 dpa | 3 | |
| PRJNA962512 | Genome-wide analysis of the MADS-box gene family involved in salt and waterlogging tolerance in barley (Hordeum vulgare L.) | 64 | Salt | NasoNijo, TX9425 | leaf, root | 3 leaf seedling | 10d 300mM salt, 1h 300mM salt, 1h waterlogging, 2 weeks waterlogging, 24h 300mM salt, 72h waterlogging, control | 2 |
| PRJNA979839 | Identification and Cloning of a Putative Male Fertility Gene Encoding an Oxidosqualene Cyclase in Qingke | 17 | Development, Anther | Qingke-Ximala 22, Qingke-Zangqing 2000 | spike | after completion of pollination, white anther, yellow anther | 3 | |
| PRJNA980246 | Multi-omics responses of barley seedlings to low- and high-LET irradiation: in search for crop radioresistance improvement | 15 | Irradiation | Fox 1 | leaf | 7 days old seedling | control, electron irradiation, gamma irradiation, neutron irradiation, proton irradiation | 3 |
| PRJNA984259 | Zeocin-induced DNA damage response in barley and its dependence on ATR | 12 | Mutant, hvatr.g | Sebastian, mutant hvatr.g | root apices | 7 days old seedling | 500 micrograms/ml zeocin, control | 3 |
| PRJNA988922 | Spatiotemporal transcriptomic plasticity in barley roots: unravelling water deficit responses in distinct root zones | 52 | Drought | Morex | root cap and meristem, root differentiation zone, root elongation zone | seedling | 24h after water deficit stress, 24h control, 48h after water deficit stress, 48h control, 6h after water deficit stress, 6h control | 3 |
| PRJNA999383 | Integrated Transcriptomics and Metabolomics Analyses Provide Insights into Qingke in Response to Cold Stress | 33 | Cold | Ximala 23, Zangqing 2000 | leaf | seedling | -5C for 24h, -8C for 24h, 0C for 24h, 12C for 24h, 24C control, 5C for 24h | 3 |