Name Search

Please enter a gene ID from one of the 8 included barley transcriptomes (see table below for more information) or the barley 50K SNP dataset. Wildcards are accepted, but be aware that large numbers of results can be returned.
Query ID :
DatasetDataset description#Transcripts#Transcripts mapped with GMAPNomenclature example
EoRNA2Transcriptome created from merging the PanBaRT20, HvMx, and BARTv2 RTD datasets653,285653,285EoRNA2_chr4H038939
MLOCsFrom RNA-seq of 8 tissues mapped to Morex WGS assembly154,788153,517MLOC_54382
JLOCsFrom RNA-seq of 16 tissues mapped to Morex WGS assembly77,36077,214JLOC1_22150
HORVUv1-334,126333,672HORVU1Hr1G000020
HORVUv3-83,99083,959HORVU.MOREX.r3.1HG0000160
BARTv1From a range of tissues, cultivars and abiotic treatments and transcripts assembled and
aligned to the barley cv. Morex reference genome, 2017 (Published paper).
177,240176,900BART1_0-u00498
BARTv2Barley RTD based on the Barke genome assembly148,260147,396BaRT2v18chr1HG009360
PanBaRT20Barley Pantranscriptome - as part of the Barley Pangenome project (Published paper)581,977581,977PanBaRT20_chr1HG00001
HvMxRTDMorex Transcriptome RTD - all available Morex RNA-seq mapped to the Morex genome149,850149,827Hv_Mx_chr1HG07237
hv50KsnpsProbes from the 50K SNP dataset44,04044,018Has a wide variety of nomenclature