Name Search
Please enter a gene ID from one of the 8 included barley transcriptomes (see table below for more information) or the barley 50K SNP dataset. Wildcards are accepted, but be aware that large numbers of results can be returned.
| Dataset | Dataset description | #Transcripts | #Transcripts mapped with GMAP | Nomenclature example |
|---|---|---|---|---|
| EoRNA2 | Transcriptome created from merging the PanBaRT20, HvMx, and BARTv2 RTD datasets | 653,285 | 653,285 | EoRNA2_chr4H038939 |
| MLOCs | From RNA-seq of 8 tissues mapped to Morex WGS assembly | 154,788 | 153,517 | MLOC_54382 |
| JLOCs | From RNA-seq of 16 tissues mapped to Morex WGS assembly | 77,360 | 77,214 | JLOC1_22150 |
| HORVUv1 | - | 334,126 | 333,672 | HORVU1Hr1G000020 |
| HORVUv3 | - | 83,990 | 83,959 | HORVU.MOREX.r3.1HG0000160 |
| BARTv1 | From a range of tissues, cultivars and abiotic treatments and transcripts assembled and aligned to the barley cv. Morex reference genome, 2017 (Published paper). | 177,240 | 176,900 | BART1_0-u00498 |
| BARTv2 | Barley RTD based on the Barke genome assembly | 148,260 | 147,396 | BaRT2v18chr1HG009360 |
| PanBaRT20 | Barley Pantranscriptome - as part of the Barley Pangenome project (Published paper) | 581,977 | 581,977 | PanBaRT20_chr1HG00001 |
| HvMxRTD | Morex Transcriptome RTD - all available Morex RNA-seq mapped to the Morex genome | 149,850 | 149,827 | Hv_Mx_chr1HG07237 |
| hv50Ksnps | Probes from the 50K SNP dataset | 44,040 | 44,018 | Has a wide variety of nomenclature |