Search for features using chromsome locations or marker/feature names

This page offers a choice of methods to retrieve a list of genes and SNP markers from a region of a chromosome. The datasets included in the database are shown in the table below. Chromosome coordinates are those of the PanGenome20 pseudomolecules.

Search a region of a chromosome
Location :
Length bp up and down stream :
Search a region between two features
Feature 1 :
Feature 2 :
Search a region between two positions
Start :
Stop :

DatasetDataset description#Transcripts#Transcripts mapped with GMAPNomenclature example
EoRNA2Transcriptome created from merging the PanBaRT20, HvMx, and BARTv2 RTD datasets653,285653,285EoRNA2_chr4H038939
MLOCsFrom RNA-seq of 8 tissues mapped to Morex WGS assembly154,788153,517MLOC_54382
JLOCsFrom RNA-seq of 16 tissues mapped to Morex WGS assembly77,36077,214JLOC1_22150
HORVUv1The Morex v1 gene annotation334,126333,672HORVU1Hr1G000020
HORVUv3The Morex v3 gene annotation83,99083,959HORVU.MOREX.r3.1HG0004350
BARTv1From a range of tissues, cultivars and abiotic treatments and transcripts assembled and
aligned to the barley cv. Morex reference genome, 2017 (Published paper).
177,240176,900BART1_0-u00498
BARTv2Barley RTD based on the Barke genome assembly148,260147,396BaRT2v18chr1HG009360
PanBaRT20Barley Pantranscriptome - as part of the Barley Pangenome project (Published paper)581,977581,977PanBaRT20_chr1HG00001
HvMxRTDMorex Transcriptome RTD - all available Morex RNA-seq mapped to the Morex genome149,850149,827Hv_Mx_chr1HG07237
hv50KsnpsProbes from the 50K SNP dataset44,04044,018Has a wide variety of nomenclature