EoRNA is a Barley Expression Database that displays gene and transcript abundance data on demand as transcripts per million (TPM) across all samples and all the genes.
EoRNA provides access to the Barley Reference Transcript Dataset (BART), which consists of 177,240 unique barley expressed transcripts covering 60,444 genes. The transcripts are arranged as gene models and homology of the longest transcript to Arabidopsis, Rice and Brachypodium is given.
You can access data directly by searching for a particular sequence ID or by BLASTing a sequence against the genomic contigs or transcript sequences using the BLAST page.
A table directly comparing the BART gene annotations with the Barley Pseudomolecules Annotation (HORVU 2017) can be downloaded from here.
If you don't have a DNA or protein sequence, you can use the Annotation Search of the BLAST annotations of the genes, which are available for the Rice Pseudo-peptides v6, the TAIR Arabidopsis thaliana Pseudo-peptides v10, and the Brachypodium distachyon Pseudo-peptides.
This research was supported and developed by Scottish Government Rural and Environment Science and Analytical Services division (RESAS) and funding from the Biotechnology and Biological Sciences Research Council and ERC project 669182 ‘SHUFFLE’.
Barley RTD : The predicted genes have the nomenclature "BART1_0-u00001". Transcript models are named after the the gene loci like "BART1_0-u00001.001".
HORVU 2017 Pseudomolecules Annotation : The predicted genes have the nomenclature "HORVU1Hr1G000010". Transcript models are named after the gene loci like "HORVU1Hr1G000010.1".
|Dataset||Gene IDs||# Genes||# Transcripts|
Searching for a gene ID will return all the transcript models from that gene region. You can go directly to a gene or transcript by using this search box: