EoRNA Downloads
The text files are in tab-delimited format and can be opened in Excel. To save on file sizes the eorna_expt_tpms.txt file has an experiment id column which relates to the experiment names in the eorna_expt_names.txt file. The meta-data spreadsheet has more details of the experiments.
Description | Download File |
All TPM values from the EoRNA database (long list format) | eorna_expt_tpms.txt.gz (723 MB) |
List of experiments names and relationship to experiment IDs in eorna_expt_tpms.txt.gz | eorna_expt_names.txt (33 KB) |
Meta-data for the RNA-seq experiments included in EoRNA | metadata_barley_rnaseq.xlsx (342 KB) |
All TPM values from the EoRNA database (in matrix format, one transcript per line) | eorna_expt_tpms_matrix.txt.gz (265 MB) |
BaRT Downloads
You can download the FASTA and GFF file for both the unpadded and padded (QUASI-ready) versions of the Barley Reference Transcript Dataset v1_0 here.
Description | Download File |
Barley RTD FASTA file, padded for QUASI analysis | BaRT.1.0_Unsplit_exons_padded.fasta |
Barley RTD GFF file, padded for QUASI analysis | BaRT.1.0_Unsplit_padded.gff |
Barley RTD FASTA file, unpadded | BaRT.1.0_Unsplit_exons_unpadded.fasta |
Barley RTD GFF file, unpadded | BaRT.1.0_Unsplit_unpadded.gff |
Barley RTD protein translations | BaRT.1.0_transdecoder.pep.fasta |
Barley RTD relationship to HORVU 2017 gene locations | Match-Overlap_All_BART_HORVU_wholeChrCoords.xlsx |
Barley RTD Transcript Annotation (tab delimited). Best BLAST hit to Brachypodium, Rice and Arabidopsis predicted proteins. | BaRT.1.0_all_annotation.txt |
Downloads for GO Analysis and Enrichment
Instructions on how to use these files in Go Enrichment Analysis can be found here.
Description | Download File |
GO Annotation | BaRTv1_0_GO_annotation_withLookup.xlsx |
BaRT_v_1_0.gmt for use in GO Enrichment | BaRT_v_1_0.gmt |