barSeed - Barley Seed Development Database

Probe CUST_9769_PI390587928

Source Contig U35_350

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9769_PI390587928	Hv_44K_v2	GAGGTGCATGTAAACTACGGCTATGCATAAAGAGAAATATACATGATAAGAATTCCAGTG	750	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364796	4776	2e-24	2171 - 2230	100	60 / 60	minus	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC11228 ABC14500 ABC35392 ABC36259 ABC45928
MLOC	MLOC_44795.2	1219	2e-24	1116 - 1175	100	60 / 60	plus	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928
JLOC1	JLOC1_29061.1	4715	8e-25	3658 - 3717	100	60 / 60	minus
JLOC1	JLOC1_29060.1	6930	8e-25	3091 - 3150	100	60 / 60	plus
Harvest21	ABC00838	827	3e-25	747 - 806	100	60 / 60	plus	ABC00838
Harvest21	ABC00497	695	3e-25	614 - 673	100	60 / 60	plus	ABC00497
Harvest35	U35_350	831	3e-25	751 - 810	100	60 / 60	plus
Harvest35	U35_195	695	3e-25	614 - 673	100	60 / 60	plus

Contig Sequence (831 bp)

>U35_350 831 Hv_44K_v2
GTCCCCCGGGCTGCAGGACAGTCTCAAGTAAAGCCTGCCTCTCCTATTAGCTATCAACGA
TGGCTCCCACTGTCATGTCGTCGGCAGCCACCGCCGTAGCACCCTTCCAGGGACTCAAGT
CCACAGCTGGTCTCCCAGTCAGCCGCCTCTCCGGCAACGCGGCTGGCCTCGGCAGCGTCA
GCAACGGCGGAAGAATCCGGTGCATGCAGGTCTGGCCGATTGAAGGCATCAAGAAGTTCG
AGACTTTGTCTTACTTGCCACCGCTCTCCACGGAGGCACTCCTGAAGCAGGTCGACTACC
TGATCCGCTCCAAGTGGGTGCCTTGTCTCGAGTTCAGCAAGGTTGGATTCATCTTCCGTG
AGCACAATGCCTCTCCAGGGTATTACGATGGCCGATACTGGACAATGTGGAAGCTACCTA
TGTTTGGGTGCACCGACGCCACACAGGTGTTAAACGAAGTGGAGGAGGTCAAGAAGGAGT
ACCCTGACGCCTATGTCCGCATCATCGGATTCGACAACATGCGTCAGGTGCAGTGCGTCA
GCTTCATCGCCTTCAAGCCACCAGGCTGCGAGGAGTCTGGCAAGGCCTAAACAAGCTAAC
TCCCTTTTATCATACAACATGGTTTCGTGCCAGGTTCATTTTATTTCCCTTTTTACTTTT
GTTCTGCTTGTGTATGTGTTCTCTCCCTGCAACTCGAGTTAACATTGTATGAGTACTACA
ATCATAAGAGTACTACAACTACGTTTGGGTGAGGTGCATGTAAACTACGGCTATGCATAA
AGAGAAATATACATGATAAGAATTCCAGTGAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_350 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g19381.1	176	1e-105	protein\|ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi3g26391.1	176	2e-115
Arabidopsis v10	AT1G67090.1	180	1e-77	\| Symbols: RBCS1A \| ribulose bisphosphate carboxylase small chain 1A \| chr1:25048465-25049249 REVERSE LENGTH=180