barSeed - Barley Seed Development Database

Probe CUST_8047_PI390587928

Source Contig U35_15259

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_8047_PI390587928	Hv_44K_v2	CATCCTGAATCCCATGACTGGTAATTCCTATCGCAAGAACACCTTTACCATACTCTATAA	1101	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365552	1176	2e-24	983 - 1042	100	60 / 60	plus	ABC03165 ABC03166 ABC03167 ABC03168 ABC03169 ABC03170 ABC09906 ABC09907 ABC21862
MLOC	MLOC_18432.1	2100	2e-24	137 - 196	100	60 / 60	minus	ABC03166
MLOC	MLOC_18432.2	794	2e-24	64 - 123	100	60 / 60	minus	ABC03166 ABC03170
JLOC1	JLOC1_12758.1	907	8e-25	672 - 731	100	60 / 60	plus
Harvest21	ABC03166	1328	3e-25	1102 - 1161	100	60 / 60	plus	ABC03166
Harvest35	U35_15259	1327	3e-25	1102 - 1161	100	60 / 60	plus

Contig Sequence (1327 bp)

>U35_15259 1327 Hv_44K_v2
TCGATCGGCTGGCCCTCGAGATAGCCAAAGCCGGGGCGGGGCCAGCTGGGCACGGCACGA
GATCCCTCCCCCCCTCCTTTCCTTCCTTCCTCCCCTCCCCTCGTCGGCCGTTCCTTTCTC
GGATCTGCCTGTCCGCCCCCACACCCCTCCCCCCCTCCCATTCCCCTCCCGCTCGGCCCG
GCGAGCAGCGTCGCCTCCCGTCCCGTCCCGTCCCCTCCCGGTAAGCGAAGCCAAGCGTCG
ACGAGGTCTTCTGTTCTGATCCGCGTGGGTTGCTCATTGGCCGGGTCATCGATCGGGGTC
CGCGGGAGGAGAGGCGGCGACGGGGAGGAAGGAAGGGAGGCGGCGATGGCGCACCGGGTG
GACAACGAGTACGACTACCTCTTCAAGATCGTGCTCATCGGCGACTCCGGCGTCGGCAAG
TCCAACATCCTCTCCCGCTTCACCCGCAACGAGTTCTGCCTCGAGTCCAAGTCCACCATC
GGCGTCGAGTTCGCCACCCGGACCCTCCAGATAGAAGGAAAGACTGTGAAGGCACAGATA
TGGGACACGGCTGGTCAGGAGAGATACCGTGCAATTACTAGTGCTTATTACAGGGGTGCT
GTTGGAGCACTCCTAGTCTTTGACATAACGAAGAGGCAGACCTTCGACAATGTTCAGAGG
TGGCTCCGTGAGCTCCGGGATCATGCAGATGCCAACATTGTTGTCATGATGGTCGGGAAC
AAGTCAGACTTGAACCACTTAAGATCGGTTCCTGAGGAAGACAGCCAAGCATTCTCTGAG
AAAGAAGGCCTCTCTTTCCTTGAGACCTCTGCACTGGAGGCAATCAATGTGGAGAAGGCA
TTCCATACTGTGCTGAGTGAAATTCACCAGATTGTAAGCAAAAAAGCACTTGCAGCACAG
GAGTCCGCTGCTGCCAACGGGCGTTCGATGCAAGGAACGACTATTAACGTTGCTGAACCA
TCCACCAACGCAAAAGGTTCTTGCTGTTCCAGTTGAAGAACTGGTTCCAGTGGAAGTGAT
TCTTGTCGGAAACTTTTGTTTTCGCAGAACTGGACCATGACATACATAGGTTATAGTTTG
GTCTCAGATATTCTTGTTTCTCATCCTGAATCCCATGACTGGTAATTCCTATCGCAAGAA
CACCTTTACCATACTCTATAACCTGCCTCTCCATCAAATCATTCCCATTTTGTATTCTTA
TAACTATCATCGATTTCACTTGTACAATCGAGAAATCGAACAACATGTTGTAACAATGAT
TATTTCCTGTTAACAACAATAATAATTGTCAATGGAATTATTATGCTCTTAAAAAAAAAA
AAAAAAA

Homology of Contig U35_15259 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g62950.1	217	2e-126	protein\|ras-related protein, putative, expressed
Brachypodium v1_2	Bradi2g54950.1	217	1e-132
Arabidopsis v10	AT3G46830.1	217	5e-111	\| Symbols: ATRAB11A, ATRABA2C, ATRAB-A2C, RAB-A2C, RABA2c \| RAB GTPase homolog A2C \| chr3:17246699-17248362 REVERSE LENGTH=217