barSeed - Barley Seed Development Database

Probe CUST_7984_PI390587928

Source Contig U35_36609

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7984_PI390587928	Hv_44K_v2	CGTTGGCTGTCTTAATGATTTTGCAATGGTATATGGAGTTCTGCATTTGCGCGGAAAAAA	9	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.154	2.661	1.189	0.806	0.323	0.314
Raw	4424.663	4469.263	1720.190	1866.035	255.502	270.189

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_43244.1	861	9e-22	88 - 142	100	55 / 55	minus	ABC00028 ABC00054 ABC00076 ABC00085 ABC00118 ABC00137 ABC00158 ABC00167 ABC00188 ABC00412 ABC00414 ABC00443 ABC00494 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC17259
Harvest35	U35_36609	644	3e-25	10 - 69	100	60 / 60	minus

Contig Sequence (644 bp)

>U35_36609 644 Hv_44K_v2
TTTTTTTTTTTTTTTCCGCGCAAATGCAGAACTCCATATACCATTGCAAAATCATTAAGA
CAGCCAACGCAGCAGAAATTTGCTGTCAGTCAGAGAGATCTCTGACATTCATTTTTTTTT
TTCAAAGCAGGACAGAGCATTACTAGATCGACACCATTACCAGAACAACGAACACTAATT
CTATTACGAAGTAGAGTACTAGGCAGTAATCGACTAAGCCTTCTTGGGGAACTTGGCGGC
CTTGTTGGGCGACTTGGGCTCCTTCTCGACCATCTTCTTGGGGAGAAGCACGGGGTTGAT
GTTGGGCAGCACGCCGCCGTGGGCGATGGTGACGCCGGCGAGCAGCTTTCCAAGCTCCGG
GTCGTTCCGGATGGCGAGCAGCAGGTGGCGCGGCATGATGCGGGACTTTTTGTTGTCCTT
GGCGGCGTTCCCGGCGAGCTCCAGGATCTCGGCGGCGAGGTACTCGAGGACGGAGGCGAG
GTANACGGGGGCGCCCCGGCCGACGCGCTGCGCGTACCGGCCCTTCTTGAGGAAGCGCCC
GATGCGGGCGACGGGGAACTGCAGCCCGGCCTTGACGGACCGCGCCACCATCTTCTTCCT
GGGGCTGCCGCCGAGCTTGCGCCCCACCACGTACCTCTTCGCCC

Homology of Contig U35_36609 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g02300.1	157	3e-58	protein\|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g37327.1	160	3e-58
Arabidopsis v10	AT5G59870.1	150	1e-52	\| Symbols: HTA6 \| histone H2A 6 \| chr5:24115605-24116144 REVERSE LENGTH=150