barSeed - Barley Seed Development Database

Probe CUST_5240_PI390587928

Source Contig U35_13719

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5240_PI390587928	Hv_44K_v2	TTGCTTGTAGCAACACCATGTGATCACCAATAGTATGGCAGTGAAATTGATTGATCATAA	859	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249354.1	1018	3e-22	877 - 935	98	58 / 59	plus	ABC01030 ABC01040 ABC01048 ABC01051 ABC01063 ABC01086 ABC01106 ABC22044 ABC51028
JLOC1	JLOC1_32266.1	911	1e-22	775 - 833	98	58 / 59	plus
Harvest35	U35_13719	950	3e-25	860 - 919	100	60 / 60	plus

Contig Sequence (950 bp)

>U35_13719 950 Hv_44K_v2
AATCAATCAATCAGCGAGCAGCGACCTAAACCTCCGCTCCGTCTCCGTCTCCGTCTCCGC
GCAAAACCCTAGCGGATCCGTCCACCCCGCGGAGAGAGGAGAGGAGAGGAGAGGGAGGGA
GCGGAGATGCAGATCTTCGTCAAGACGCTGACCGGCAAGACCATCACGCTCGAGGTCGAG
AGCAGCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCA
GACCAGCAAAGGCTAATTTTTGCTGGAAAGCAGTTGGAAGATGGGCGAACATTAGCTGAT
TACAACATTCAGAAAGAGTCGACGCTCCATTTGGTCCTGAGGCTCAGGGGTGGAACTATG
ATCAAGGTGAAGACACTTACTGGGAAGGAAATTGAGATTGATATTGAGCCCACTGACACA
ATCGATAGAATCAAGGAACGTGTTGAGGAGAAAGAGGGTATTCCACCTGTTCAACAGAGG
CTCATCTATGCTGGGAAGCAACTCGCTGATGACAAAACTGCAAAGGACTACAACATCGAA
GGTGGTTCAGTGCTCCATCTTGTGCTTGCTCTGAGGGGTGGTCAGTAGATGCAACTTCGA
CGTGGACCGTATAGGCCATTTCTACCAGAACTTGTTGCGGACCTAGATCTGTGAATTTGC
CGGTTGATTGAAGTACCATGTAATTGACGATTGTGAAGTCAGCTGTCATCTGTACTGGAT
GGATTGTTTGAACTCTATATGCTCATCTGATTTCTGGTTGCGTTAAAAAAAAAAAAAAAA
AAATCTTTTCTCAACAAGATAGGGCATTACAAGTACGGCCTCTGCTTGTTGACCATTGTT
CCTTCCATCTGGCTTATGATTGCTTGTAGCAACACCATGTGATCACCAATAGTATGGCAG
TGAAATTGATTGATCATAAAATAAACAAAAAAAAAAGCTCGAGGGGGGGC

Homology of Contig U35_13719 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g44080.1	154	7e-88	protein\|ubiquitin family protein, putative, expressed
Brachypodium v1_2	Bradi1g30940.1	154	3e-88
Arabidopsis v10	AT1G31340.1	156	2e-87	\| Symbols: RUB1, NEDD8, ATRUB1 \| related to ubiquitin 1 \| chr1:11218076-11219417 REVERSE LENGTH=156