barSeed - Barley Seed Development Database

Probe CUST_40490_PI390587928

Source Contig U35_29336

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40490_PI390587928	Hv_44K_v2	AATATTCAGAGGCAATATACCCGTTGTATATCAAAAGGGCCGCTTCCAGGGGTTAACAGG	227	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371426	1694	2e-24	1108 - 1167	100	60 / 60	plus	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC	MLOC_45216.13	1425	2e-24	805 - 864	100	60 / 60	minus	ABC01488 ABC23356 ABC45008
MLOC	MLOC_45216.4	1884	2e-24	1264 - 1323	100	60 / 60	minus	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC	MLOC_45216.11	853	2e-24	497 - 556	100	60 / 60	minus	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC	MLOC_45216.1	1134	2e-24	514 - 573	100	60 / 60	minus	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
JLOC1	JLOC1_29356.12	1198	8e-25	262 - 321	100	60 / 60	plus
JLOC1	JLOC1_29356.11	1812	8e-25	459 - 518	100	60 / 60	plus
JLOC1	JLOC1_29356.10	1061	8e-25	459 - 518	100	60 / 60	plus
JLOC1	JLOC1_29356.8	1414	8e-25	562 - 621	100	60 / 60	plus
JLOC1	JLOC1_29356.7	864	8e-25	262 - 321	100	60 / 60	plus
JLOC1	JLOC1_29356.6	1498	8e-25	562 - 621	100	60 / 60	plus
JLOC1	JLOC1_29356.4	1478	8e-25	459 - 518	100	60 / 60	plus
Harvest21	ABC28589	333	3e-25	228 - 287	100	60 / 60	plus
Harvest35	U35_29336	333	3e-25	228 - 287	100	60 / 60	plus

Contig Sequence (333 bp)

>U35_29336 333 Hv_44K_v2
GCCGCGCTTCATCCATGGCAGCGAGGCATCGGGTCTCTGCCGTGATCTTCGACCTCGATG
GCACCCTCCTGGACACATAGAGGGAAAAAGGGACGTCCTGAAAGAGTTCTTGGAGACCTA
CGGGAAGGTCCCAGATGCGGCCAAGGAGGAGAAGCGATTGGGGCAGATGCACAGGGAGTC
CACGACCGGGATCAACGCAGATTACGGGTTGCCGATCACTGTCGAGGAATATTCAGAGGC
AATATACCCGTTGTATATCAAAAGGGCCGCTTCCAGGGGTTAACAGGCTTCTCGAGCACC
TCCACAAGAACGGAGTACCCCTTGCGCTCGCTT

Homology of Contig U35_29336 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None