barSeed - Barley Seed Development Database

Probe CUST_40153_PI390587928

Source Contig U35_49605

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40153_PI390587928	Hv_44K_v2	TAAATACAAAGGAGCATCAGGCTGCAACAGTTATTCAATCAGCCTTTCGAGCATTCTTGG	551	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371747	2557	2e-24	2274 - 2333	100	60 / 60	plus	ABC08511 ABC12319 ABC15629 ABC24189 ABC26165 ABC40107 ABC40364 ABC40947
MLOC	AK361351	1800	2e-24	445 - 504	100	60 / 60	plus	ABC10757 ABC10758
MLOC	AK353868	1780	2e-24	370 - 429	100	60 / 60	plus	ABC10757 ABC10758
MLOC	MLOC_10327.1	678	2e-24	421 - 480	100	60 / 60	plus	ABC10758
JLOC1	JLOC1_6752.1	1008	8e-25	424 - 483	100	60 / 60	plus
Harvest21	ABC51425	611	3e-25	552 - 611	100	60 / 60	plus
Harvest35	U35_49605	611	3e-25	552 - 611	100	60 / 60	plus

Contig Sequence (611 bp)

>U35_49605 611 Hv_44K_v2
TGCAAGTGCAAGGATTGCCGTAATCCCTTTGGGTCCAGAGAGGCTGGTGTGTCCAACGCT
AGTCCAGGAGAAACCACACCACCATCAAGCACTGGAACGAAACCCGACCGATGCCATTAC
AAGGTAAACAGATGCAAAAAAGCGGGGCTGTTACTGTGTGAAGCACAAGGTCAGGTGCAC
CTCATATTGCAAGTGCCTAGGGTGTGACAATCCCAAGGGGGTCAAAGGAGGTGAGTTGAA
CACCGGATCAGGAAGTGCTGATGGCGTAGGCAACATACCTGACGAAGCAGTGCAAACGAC
CACACCATCAATTACTGAACCAGGTCAGGTTGATACTACCAGCATGGCATATTGTCCGGA
TCAACCCTCACGGCCTATGAGCGAGTGACCAGGATTCTAGGTAACTGAGAGGAGCTCTGC
TGCTCAGGTGCTACACAAACGGAAGCATTCCGTGGATACTGAAGGTGCCCTTGCAGTTGC
AGAACACACAGTGCAAACTGAACCATTGGCTAGTGACACCAATACACAGACAATTTCATC
TCAGACTGAACTAAATACAAAGGAGCATCAGGCTGCAACAGTTATTCAATCAGCCTTTCG
AGCATTCTTGG

Homology of Contig U35_49605 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None