- Probe CUST_39810_PI390587928
- Source Contig U35_24912
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_39810_PI390587928 | Hv_44K_v2 | TCACTAGCGTTGTTGCTCAAAACATGTAAGTAGAGATCATTTGACCCATTTGAAGATCAA | 147 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_76694.1 | 253 | 7e-23 | 29 - 88 | 98 | 59 / 60 | plus | ABC24189 |
| MLOC | MLOC_56397.1 | 221 | 7e-23 | 124 - 183 | 98 | 59 / 60 | minus | ABC24189 |
| MLOC | MLOC_35409.1 | 306 | 7e-23 | 23 - 82 | 98 | 59 / 60 | minus | ABC24189 |
| MLOC | MLOC_32115.1 | 315 | 7e-23 | 234 - 293 | 98 | 59 / 60 | plus | ABC24189 |
| MLOC | MLOC_28154.1 | 217 | 7e-23 | 42 - 101 | 98 | 59 / 60 | minus | ABC24189 |
| MLOC | MLOC_10978.1 | 1260 | 7e-23 | 1174 - 1233 | 98 | 59 / 60 | plus | ABC24189 ABC40107 |
| MLOC | AK248932.1 | 1992 | 3e-21 | 1614 - 1673 | 97 | 58 / 60 | plus | ABC12319 ABC15629 ABC24189 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127 |
| MLOC | AK365780 | 2319 | 3e-21 | 1921 - 1980 | 97 | 58 / 60 | plus | ABC12319 ABC15629 ABC24189 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127 |
| MLOC | MLOC_26040.1 | 303 | 3e-21 | 203 - 262 | 97 | 58 / 60 | plus | ABC24189 |
| JLOC1 | JLOC1_21008.1 | 317 | 4e-23 | 236 - 295 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_7227.2 | 1170 | 4e-23 | 1084 - 1143 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_42276.1 | 262 | 1e-22 | 1 - 59 | 98 | 58 / 59 | plus | |
| JLOC1 | JLOC1_51147.1 | 221 | 2e-21 | 1 - 57 | 98 | 56 / 57 | plus | |
| JLOC1 | JLOC1_17709.1 | 332 | 2e-21 | 203 - 262 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC24189 | 480 | 3e-25 | 148 - 207 | 100 | 60 / 60 | plus | ABC24189 |
| Harvest35 | U35_24912 | 480 | 3e-25 | 148 - 207 | 100 | 60 / 60 | plus |
Contig Sequence (480 bp)
>U35_24912 480 Hv_44K_v2 GCACGAGGAAGAGATCACGGTCAAAGTCTAAATGCACTCATAGGATCTGCATAGGATGTA TCCTCTACTCCTATCTATTTATCAATAGAAATCTCTATGCTTTTCAAGTGTTGTAATTTG CTAGAGGTTGCTCTTTTCGCCTCTGCATCACTAGCGTTGTTGCTCAAAACATGTAAGTAG AGATCATTTGACCCATTTGAAGATCAAATTTATAATTAGATACCATTCTTGAAGATCTTC ATGATTTAGAGTGTTAAATTTGACATGTTGATGATTTCATCTTGTAGGTTGCCACGCGGA TGCTCTTTGGACTACGATATGGACACGAAGGCATTTCTTTTAGTGCTAAATATTACGTAC TAATGCCCGCAAAGTATCGTTGTTTATTATATTTTCTATGGAGCTATGTATGTATGGATG CTATGGAACTATGTGTATATATGGATGCTATGGAATTTTGGATGTAAAAAAAAAAAAAAA
Homology of Contig U35_24912 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |