barSeed - Barley Seed Development Database

Probe CUST_39519_PI390587928

Source Contig U35_13915

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39519_PI390587928	Hv_44K_v2	CTTGTTCTTGTTGTTACTTGCTGTGATGTGTCAATGCTAAGCCGTGTGAAAATCAAAAAA	577	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374620	653	3e-22	589 - 644	100	56 / 56	plus	ABC00016 ABC00054 ABC00076 ABC00085 ABC00096 ABC00119 ABC00137 ABC00145 ABC00158 ABC00167 ABC00188 ABC00321 ABC00350 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00671 ABC00709 ABC00869
Harvest21	ABC00119	648	3e-25	578 - 637	100	60 / 60	plus	ABC00119
Harvest35	U35_13915	649	3e-25	578 - 637	100	60 / 60	plus

Contig Sequence (649 bp)

>U35_13915 649 Hv_44K_v2
CGCCCTCCAACCTCACACAGATCCCGGCCATCTCCTCTGTTCCGGCGACAACCGCACCAG
CGGCTCCACCCTCCACCTCGACCCTAAGATGGCCATCGCTGGCAGCGGGAGGGGCAAGGC
GAAGCCCGCCGCCAGCGCCAAGTCCGTGTCCCGGTCGTCCAAGGCCGGCCTGCAGTTCCC
CGTCGGCCGCGTCGCCAGGTACCTCAAGGTCGGCAAGTACGCGGAGCGCGTCGGCGCCGG
CGCCCCCGTCTACCTCGCCGCCGTCCTCGAGTACCTCGCCGCAGAGACTCTGGAGCTCGC
CGGCAACGCGGCGCGGGACAACAAGAAGAACCGGATCGTGCCGCGCCACATCCAGCTGGC
CGTGCGCAACGACGAGGAGCTGAGCCGGCTGCTGGGCTCGGTCACCATCGCCGCCGGCGG
GGTGCTCCCCAGCATCCACACCACGCTCCTCCCCAAGAAGGCCGGCAAGGCCAAGGGCGA
CATCGGCTCCGCGTCCCAGGAGTTCTAGATTAGATTACTGTTCTCGTGACATCGATGTTG
GTGCTGGATCTGGTTGGAATGGATTGCAGCTTGCAATCTTGTTCTTGTTGTTACTTGCTG
TGATGTGTCAATGCTAAGCCGTGTGAAAATCAAAAAAAAAAAAAAAAAA

Homology of Contig U35_13915 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g34510.1	139	3e-51	protein\|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
Brachypodium v1_2	None
Arabidopsis v10	None