barSeed - Barley Seed Development Database

Probe CUST_3833_PI390587928

Source Contig U35_14348

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3833_PI390587928	Hv_44K_v2	GCCGCCATGCATGTTGTGCAATGGGAAAAATTAACGAGGAGCTTTTTCTGTTGTAAAAAA	1252	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.974	0.813	0.720	0.588	1.345	1.198
Raw	3.293	3.110	2.640	3.589	3.180	3.181

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360063	1417	9e-22	1348 - 1402	100	55 / 55	plus	ABC02112 ABC02113 ABC02114 ABC02115 ABC02118 ABC02119 ABC18641
MLOC	MLOC_8172.1	882	9e-22	797 - 851	100	55 / 55	plus	ABC02113 ABC02115 ABC18641
JLOC1	JLOC1_5409.1	896	5e-22	825 - 879	100	55 / 55	plus
Harvest35	U35_14348	1323	3e-25	1253 - 1312	100	60 / 60	plus

Contig Sequence (1323 bp)

>U35_14348 1323 Hv_44K_v2
TCGAGCACTGTTGGCCTACTTGGTGGATTGCATCCAGTACAAGTATCTCTCACTAGACGT
TGGCTAGAAAGAAGCCATGGCCTCTACTTCGTCCCTATCAGTCGTGTTGCTCTTGTGCCT
GGCCGTGGCGGCGTCGGCGCAGCTGTCGCCGACGTTCTACCAAACGACGTGCCCGAACGC
TCTGTCCACCATCAAGGCCGCCGTGACGGCCGCCGTGAACAAGGAGAACCGCATGGGCGC
GTCGCTGCTCCGGCTGCACTTCCACGACTGCTTTGTCCAAGGTTGTGACGCGTCTGTTCT
GCTGTCTGGCATGGAACAAAACGCGGCGCCGAACGTCATGTCCCTGCGAGGCTTCGAAGT
CATAGACAGCATCAAGGCGAAGCTCGAGACCATGTGCAAGCAGACCGTCTCCTGCGCCGA
CATCCTCACCGTCGCTGCCCGCGATTCCGTCGTCGCCTTGGGAGGGCCATCGTGGACGGT
TCCGCTAGGAAGGAGGGACTCCACCAATGCAAACGAAGCAGCGGCGAACTCCGACCTACC
TCCCCCGTTCTTCGACCTCGTCAACCTCACCCAATCCTTCGGCGACAAGGGCTTCACCGT
CACCGACATGGTCGCGCTCTCCGGTGCCCACACCATCGGACAGGCGCAGTGCCAGAACTT
CAGGGATAGGCTCTACAACGAGACTAACATCAACTCCGGCTTCGCGACGTCGCTCAAGGC
CAACTGCCCCCGGCCGACCGGCTCCGGCGACCGCAACCTGGCCAATCTGGACGTGTCTAC
CCCGTACTCATTCGACAACGCCTACTACAGCAACCTCAAGTCCCAGAAGGGGCTCCTGCA
CTCTGACCAGGTGCTCTTCACCGGCACGGGCGGCGGCACGGACAACATCGTCAACAACTT
CGCGAGCAACCCAGCTGCGTTCAGCGGCGCCTTTGCCTCGGCCATGGTGAAGATGGGGAA
CCTCAGCCCATTGACTGGCTCTCAGGGGCAGGTCAGGCTGAGCTGCTCCAAGGTGAATTA
ACTGGCAAAAAATAATGATATATGTGGGATTAATAAGGCTAGCAATGGCCAATATATATA
ATATCATGTATTGTATATTATATACAATCCATGATGTACTTAGGTGTCGTTACTTGGACC
ATAAACTTGTGAAACAGGAGATGTGTCATATATGTATGTCACAAAGGGCCTCGTGCAAAG
GCATGAAGCTTTCTCTTAAGTCAGTTACTTTGTTGGCTGCTGAATAGGCCATGCCGCCAT
GCATGTTGTGCAATGGGAAAAATTAACGAGGAGCTTTTTCTGTTGTAAAAAAAAAAAAAA
AAA

Homology of Contig U35_14348 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g48010.1	316	2e-155	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi1g17870.1	316	6e-170
Arabidopsis v10	AT5G05340.1	324	5e-120	Peroxidase superfamily protein \| chr5:1579142-1580819 REVERSE LENGTH=324