- Probe CUST_37802_PI390587928
- Source Contig U35_22657
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_37802_PI390587928 | Hv_44K_v2 | AAGGCATGGAGGATTGCTTCAACTACATTTGAGTATGACATACTTCGAGATGCTAAAAAA | 458 | GeneList: None MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.942 | 0.787 | 1.317 | 0.569 | 1.302 | 1.159 |
| Raw | 3.203 | 2.522 | 7.650 | 3.095 | 2.705 | 2.651 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_74605.1 | 1253 | 3e-22 | 1169 - 1224 | 100 | 56 / 56 | plus | ABC02112 ABC02113 ABC02115 ABC02119 ABC02123 ABC18641 ABC50221 |
| JLOC1 | JLOC1_49723.1 | 1463 | 1e-22 | 1179 - 1234 | 100 | 56 / 56 | plus | |
| Harvest35 | U35_22657 | 529 | 3e-25 | 459 - 518 | 100 | 60 / 60 | plus |
Contig Sequence (529 bp)
>U35_22657 529 Hv_44K_v2 GGCCAACTGCCCCCAGTCCGGCGGCGACAACAGCCTGGCGCCGCTGGACACGGCGACGCC CAACGCGTTCGACAATGGCTACTACACCAACCTCATGTCGCAGAAGGGGCTGCTGCGCTC GGACCAGGTGCTCTTCAACAGCGGCGGCGCCGACAACACGGTCAGGAGCTTCGCGTCCAG CGCAGCGACGTTCAACAGCGCCTTCACGACAGCCATGGTGAACATGGGGAACATCGCGCC CAAGACGGGGACGCAGGGACAGATCAGGCTCGTCTGCTCCAAGGTCAACTCGTAATCTGC TCGCCGACACTCTGCTGCTACGCATGGATGGACTAAATAAGGTCTCGGAGACCAGTACTG GCACCTACCGAGTATGTGGCGTGTGTATGTACGGTGGGGGTGAAAATTGTACGGGTGCGT CCGTCCGTGCGCCCACATCTTTAACGAATTCTCGTGCAAAGGCATGGAGGATTGCTTCAA CTACATTTGAGTATGACATACTTCGAGATGCTAAAAAAAAAAAAAAAAA
Homology of Contig U35_22657 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |