barSeed - Barley Seed Development Database

Probe CUST_36710_PI390587928

Source Contig U35_7543

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36710_PI390587928	Hv_44K_v2	ACCGAAGAAAGGAGAGTTTGTCTTTGTTTCTGCTGCATCTGGAGCAGTTGGTCAGATTGT	596	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371747	2557	2e-24	819 - 878	100	60 / 60	plus	ABC08511 ABC12319 ABC15629 ABC24189 ABC26165 ABC40107 ABC40364 ABC40947
MLOC	AK370453	1200	2e-24	554 - 613	100	60 / 60	plus	ABC34597 ABC43043
MLOC	MLOC_35715.1	366	2e-24	242 - 301	100	60 / 60	plus	None
JLOC1	JLOC1_23018.1	349	8e-25	225 - 284	100	60 / 60	plus
Harvest21	ABC52100	535	3e-25	457 - 516	100	60 / 60	plus
Harvest21	ABC17565	606	3e-25	546 - 605	100	60 / 60	plus
Harvest21	ABC17564	597	2e-21	545 - 597	100	53 / 53	plus
Harvest35	U35_50081	535	3e-25	457 - 516	100	60 / 60	plus
Harvest35	U35_7543	656	3e-25	597 - 656	100	60 / 60	plus

Contig Sequence (656 bp)

>U35_7543 656 Hv_44K_v2
GTGCTTACCTAAACATCGGCGACTCCCACCCCCACTGTTCACCCGGCACCTCACCTACCT
AAACCTCGGCGAGCTCCGTTCCCTCCACCAAAAGCGCTTGCTACTCCCCGGACGGCGGCA
ATGGAGCAAGCGAGCCCGCCGGCGGGGTCGGCGAGGAACCGGAAGGTGGTGCTGCGGGAG
TACATCAGCCGCGCGCCGAGGGAGGACGACATGTCGCTCGTCGACGGGGGCGCCGTGCCG
CTGCGCGTCCCCGAGGGCGCCGCCGGCCCGGCCGTGCTGGTGAAGAACCTCTACCTCTCC
TGCGACCCCTACATGCGCGGCCGGATGCGGGACTTCCACGGCTCCTACATCCCTCCGTTC
AAGCCCGGATCTGTTATAGAAGGGCTGGGCGTGGCGAGAGTGGTGGACTCCACTCATCCG
GGGTTCGTCGCCGGCGACATTGTTTCGGGAATGACTGGCTGGGAGGAATACAGCCTGATT
GACAAGCCTGAACAGCTGAACAAGATTCAGCAAAGCGACATACCAGTCTCCTACCATTTG
GGGCTTCTCGGCATGCCTGGTTTTACAGCTTACGTTGGATTCTATGAAATCTGCTCACCG
AAGAAAGGAGAGTTTGTCTTTGTTTCTGCTGCATCTGGAGCAGTTGGTCAGATTGT

Homology of Contig U35_7543 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g66720.1	360	2e-105	protein\|NADP-dependent oxidoreductase, putative, expressed
Brachypodium v1_2	Bradi2g57440.1	356	4e-110
Arabidopsis v10	AT1G65560.1	350	7e-66	Zinc-binding dehydrogenase family protein \| chr1:24371608-24373673 REVERSE LENGTH=350