- Probe CUST_36527_PI390587928
- Source Contig U35_31686
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_36527_PI390587928 | Hv_44K_v2 | AAGCTGTCGCTGACGAGGGCGGTGTTCTACATCATCATGCAGTGCCTGGGCGCCATCTGC | 379 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_80094.1 | 1170 | 2e-24 | 472 - 531 | 100 | 60 / 60 | plus | ABC01216 ABC01219 ABC01222 ABC01223 ABC01225 ABC01226 ABC01228 ABC01230 ABC01235 ABC01237 ABC01242 ABC19393 ABC31055 ABC47730 |
MLOC | MLOC_80094.2 | 1506 | 2e-24 | 620 - 679 | 100 | 60 / 60 | minus | ABC01216 ABC01219 ABC01222 ABC01223 ABC01225 ABC01226 ABC01228 ABC01230 ABC01235 ABC01237 ABC01242 ABC19393 ABC47730 |
JLOC1 | JLOC1_53340.1 | 1919 | 8e-25 | 760 - 819 | 100 | 60 / 60 | plus | |
Harvest21 | ABC01242 | 1751 | 3e-25 | 1099 - 1158 | 100 | 60 / 60 | minus | ABC01242 |
Harvest21 | ABC01237 | 1647 | 3e-25 | 459 - 518 | 100 | 60 / 60 | plus | ABC01237 |
Harvest35 | U35_31686 | 440 | 3e-25 | 380 - 439 | 100 | 60 / 60 | plus | |
Harvest35 | U35_31556 | 404 | 3e-25 | 330 - 389 | 100 | 60 / 60 | plus | |
Harvest35 | U35_13831 | 1259 | 3e-25 | 491 - 550 | 100 | 60 / 60 | plus | |
Harvest35 | U35_13685 | 683 | 3e-25 | 594 - 653 | 100 | 60 / 60 | plus |
Contig Sequence (440 bp)
>U35_31686 440 Hv_44K_v2 ACCACACGCTCACACCAAAGCCGCCCATCTCGTTCCGTTCCAGCTCAGGCGAGCCAGCGA CCACCGGCCTCCGGCGAGGGCAGCAGCGATGGAGGGCAAGGAGGAGGACGTGCGCCTCGG GGCGAACAAGTACTCGGAGCGGCAGCCCATCGGCACGGCGGCGCAGGGGTCCGAGTTCAT GGCCACCTTCCTCTTCCTCTACGTCACCATCCTCACCGTCATGGGCTACAGCGGCGCCGC CTCCAAGTGCGCCACCGTCGGCATCCAGGGCATCGCCTGGTCCTTCGGCGGCATGATCTT CGCCCTCGTCTACTGCACCGCCGGCATCTCTGGCGGGCACATCAACCCGGCGGTGACCTT CGGGCTGTTCCTGGCGAGGAAGCTGTCGCTGACGAGGGCGGTGTTCTACATCATCATGCA GTGCCTGGGCGCCATCTGCG
Homology of Contig U35_31686 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | LOC_Os02g44630.3 | 221 | 7e-67 | protein|aquaporin protein, putative, expressed |
Brachypodium v1_2 | Bradi5g18170.1 | 289 | 3e-67 | |
Arabidopsis v10 | AT1G01620.1 | 286 | 5e-61 | | Symbols: PIP1C, TMP-B, PIP1;3 | plasma membrane intrinsic protein 1C | chr1:225986-227176 REVERSE LENGTH=286 |