barSeed - Barley Seed Development Database

Probe CUST_3645_PI390587928

Source Contig U35_289

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3645_PI390587928	Hv_44K_v2	GATTAGTCAGATGCCTGGTTTTTCAATTCTCTGAAGGCAATTATTTGCTGTAATCACAAG	357	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372088	2400	2e-24	2168 - 2227	100	60 / 60	plus	ABC01488 ABC45008
MLOC	MLOC_45216.12	1931	2e-24	309 - 368	100	60 / 60	minus	ABC01488 ABC23356 ABC45008
MLOC	MLOC_45216.13	1425	2e-24	307 - 366	100	60 / 60	minus	ABC01488 ABC23356 ABC45008
MLOC	MLOC_45216.3	1554	2e-24	349 - 408	100	60 / 60	minus	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC	MLOC_45216.4	1884	2e-24	349 - 408	100	60 / 60	minus	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC	MLOC_45216.9	1333	2e-24	338 - 397	100	60 / 60	minus	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC	MLOC_45216.10	1847	2e-24	334 - 393	100	60 / 60	minus	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC	MLOC_45216.6	1349	2e-24	348 - 407	100	60 / 60	minus	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC	MLOC_45216.8	1963	2e-24	341 - 400	100	60 / 60	minus	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC	MLOC_45216.7	1966	2e-24	344 - 403	100	60 / 60	minus	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
JLOC1	JLOC1_29356.12	1198	8e-25	760 - 819	100	60 / 60	plus
JLOC1	JLOC1_29356.11	1812	8e-25	1374 - 1433	100	60 / 60	plus
JLOC1	JLOC1_29356.9	1507	8e-25	1069 - 1128	100	60 / 60	plus
JLOC1	JLOC1_29356.6	1498	8e-25	1060 - 1119	100	60 / 60	plus
JLOC1	JLOC1_29356.3	1381	8e-25	943 - 1002	100	60 / 60	plus
Harvest21	ABC45008	576	3e-25	295 - 354	100	60 / 60	minus	ABC45008
Harvest35	U35_289	711	3e-25	358 - 417	100	60 / 60	plus

Contig Sequence (711 bp)

>U35_289 711 Hv_44K_v2
TTGATTCTCTTTTCTCTTCGCCTCTTGTGGCGACCACTTTGTCGTTTCCGTCTCGACCTC
AGATTTTGTCTCCTGTCCTACAGCCTGCGGCGATAAAAAAATCGGCGTCGAACCTGACCA
TAATATGTTTGTTTCCTCTCATGCCACTTCTATATGATCATAATATGTTTGCAGAATGTT
ACTTTGTAGAATCATTGTTCAGCCTCTTTGTTTATATATGCGGAGTTCTTATTCATTTGA
TTTTATCCTTTTGGCAGGCACTTGTAGCTTAAACTATGAACATTTCTGTCACATACCGTC
TCTTTAAATCTGAATCTTGATTGCTTCTATTTACTCTGAGTGTGAGATGTGTAGTAAGAT
TAGTCAGATGCCTGGTTTTTCAATTCTCTGAAGGCAATTATTTGCTGTAATCACAAGTTG
TAAGCAGCCAAAATGGTGAAGGTTTGCTGCATCGGAGCTGGCTACGTCGGCGGCCCAACA
ATGGCTGTTATTGCCATCAAATGCCCGACAATTGAGGTGATGTGCGAATCCAAGTACGAA
GCTGTGAAGCATATCAGCAAAGAGTAGCATATTATGTGTTGTAATTGTAGGCAGTAGTAG
GCTTATTTGGGCTGTAGTATAATGTAATGATTGTAATAGACTAATGTAGTGTTGTTTTGG
ATGAATTCCGTTTGCTTTTTGGATTGTTCAAAATAAAAAAAAAAAAAAAAA

Homology of Contig U35_289 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None