barSeed - Barley Seed Development Database

Probe CUST_35281_PI390587928

Source Contig U35_9614

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35281_PI390587928	Hv_44K_v2	AATAGCACCAGCAGCATCAAATAATCCGTGAAAGGAAAGTGACACTTGCATGCATGTATG	1066	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_26040.1	303	2e-24	14 - 73	100	60 / 60	plus	ABC24189
MLOC	AK248932.1	1992	7e-23	1425 - 1484	98	59 / 60	plus	ABC12319 ABC15629 ABC24189 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
MLOC	AK365780	2319	7e-23	1732 - 1791	98	59 / 60	plus	ABC12319 ABC15629 ABC24189 ABC26165 ABC38338 ABC39738 ABC40107 ABC40364 ABC40947 ABC47127
JLOC1	JLOC1_17709.1	332	8e-25	14 - 73	100	60 / 60	plus
Harvest21	ABC19386	1199	3e-25	1067 - 1126	100	60 / 60	plus
Harvest35	U35_9614	1199	3e-25	1067 - 1126	100	60 / 60	plus

Contig Sequence (1199 bp)

>U35_9614 1199 Hv_44K_v2
GATCTTGTATGATTCCAGATGTTCAGGTGTATCGCACTGCATGCTACACAAGTCAATTTT
GCAGGTTGCTCTGAAATGCGCTGAGTTAGATACAGCCGCCTGTCTGCGGCAATTTCTTGC
TCTTGGTGCAAAGAAAGAGACTATATTCTTCAAATGACTCCCCAATGTTGGGGACCTCAG
TCTCTAGATTCTGAGAAGCAAGGGCGTTGCATGATGGAAGCAGCATACCTAGGCAGCCCA
ATGCTGGTCTACTACTTGAAGACGTCAAGAAGGAGGCTGCTGATTATTCCGACATTGATG
GCTTGAATGGACCGAAACTGTTTGGATCAGGAAAAAGGACATCGCTGGATGGTGGTTCAG
GTAGGAGGGCGGCAAGATCAGTGTTGACTCTGGTCATGCTGGAGGACGATATGCCACGAG
AAGGAGAAACAACTTCTACAACGTTTGCATCCCTTCTTGATTCAGCGATACAAGGATTGA
TGCCCTTCCCGGACGTGATTTTACAATTTGAGAGGACATGTAGAAACGCTTCAGAGTCAC
TAAGGTATGCCGCCAGAGGAAACATTCGGATGGTGGAGGATAAACTTATGCGGCAAAAAG
CAAAACTATTACTGGTTGAAGCTGCTTCTTGGTCCCTTCTTTGGTACCTCTATGGGAAAG
CAAATGAAGAGCTTCCTGAAGGACAATTCATGTCACCAACTACATCCCATTAGGAGGCTT
GCCGCTATGTTGCAATGGATCTTACAACACAATTGTGTCCGCGGATTGTACTTTGGCTTG
AAGGACTTTAGTCTTTTCTATTTCCTCTTTGATACGTGGGAGCCCTATAGTGGAACATGA
TTGATTGATTCCTTTAGTAAAAGAATTAGCAAAGTAAATAGATACATCTCTCCATGATAT
GTTAACTTAAATATTTGAGTTGAAAGGTATTAAGCTACAATGTACTCGCTCTGAACACGA
ATATAGAAGGCACAATGATCAACATGGTACTAGAATTGTCTAAATTGCCCCTAATTAATA
TTTGTCAATACATTCAATGCAACTGCTCTTTGTTCCACCATCACCTAATAGCACCAGCAG
CATCAAATAATCCGTGAAAGGAAAGTGACACTTGCATGCATGTATGTGAAGTAGACAAGC
AATGAGTGTACCGCCTAGAGGTGCTTCTTTCTCTACTCCTATCTATNTACCAATATAAA

Homology of Contig U35_9614 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g42420.1	1089	3e-94	protein\|nuclear pore protein 84/107 containing protein, expressed
Brachypodium v1_2	Bradi4g11687.1	1074	1e-100
Arabidopsis v10	None