barSeed - Barley Seed Development Database

Probe CUST_35181_PI390587928

Source Contig U35_13961

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35181_PI390587928	Hv_44K_v2	TGCTGTGTCCTTGTATTTTCTGACCGTGGTTTCAATGAAACTTTGCTTTCATGCAAAAAA	639	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.181	1.408	1.158	0.985	0.595	0.493
Raw	18712.667	35607.647	25365.100	32996.633	7075.803	6411.430

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_22769.1	151	3e-22	53 - 108	100	56 / 56	plus	None
MLOC	AK369538	691	3e-21	638 - 691	100	54 / 54	plus	ABC00028 ABC00054 ABC00076 ABC00118 ABC00145 ABC00167 ABC00188 ABC00286 ABC00412 ABC00414 ABC00443 ABC00571 ABC00648 ABC00656 ABC00709 ABC00869 ABC17259
Harvest21	ABC00414	699	3e-25	629 - 688	100	60 / 60	plus	ABC00414
Harvest35	U35_13961	710	3e-25	640 - 699	100	60 / 60	plus

Contig Sequence (710 bp)

>U35_13961 710 Hv_44K_v2
ACCAACGCACCCGGCAATCAGCAGTCAAGCAATCTCCACACACATCTCTCCTACTCCCGA
ATCCGTTCTCCACCTAGCCATGGACGCCTCAGCCACCGTAGCCGCCGGGAAGGGGAAGAA
GGGCGCGGCCGGGCGCAAGGCCGGCGGCCCCAGGAAGAAGTCCGTGTCGCGGTCCGTCAA
GGCCGGGCTCCAGTTCCCCGTCAGCCGCATCGGGCGCTTCCTCAAGAAGGGCCGCTACGC
GCAGCGCGTCGGTTCCGGCGCCCCCGTCTACCTCGCGGCGGTCCTCGAGTACCTCGCCGC
CGAGCTGCTGGAGCTGGCGGGCAACGCCGCCAAGGACAACAAGAAGAGCCGCATCACCCC
CCGCCACCTGCTGCTCGCCATCAGGAACGACGAGGAGCTCGGCAAGCTGCTCGCCGGCAT
CACCATCGCGCACGGCGGCGTCATCCCCAACATCAACCCGGTGCTGCTCCCCAAGAAAAC
CGCCGAGAAGTCGCCCAAGGAGCCCAAGTCGCCCAAGAAGACCGCCAAGTCCCCCAAGAA
GGCGTAGGCGGCCATTGCATAGTTAGGTCGGAGTAGCTGGGATGGATGTTACATGCATGG
GTGTGCTTCAGGATACTTCAGCTCGAAGTAGACTGTTCTTGCTGTGTCCTTGTATTTTCT
GACCGTGGTTTCAATGAAACTTTGCTTTCATGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_13961 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None