barSeed - Barley Seed Development Database

Probe CUST_34613_PI390587928

Source Contig U35_190

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34613_PI390587928	Hv_44K_v2	TTAAAAAAGTTCGATATGTATAGTTTGTAAAGTGTGGCGTGTCTTGGTGCAGAGAGGGAA	945	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371426	1694	2e-24	907 - 966	100	60 / 60	plus	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC	AK372088	2400	2e-24	965 - 1024	100	60 / 60	plus	ABC01488 ABC45008
MLOC	MLOC_45216.12	1931	2e-24	1512 - 1571	100	60 / 60	minus	ABC01488 ABC23356 ABC45008
MLOC	MLOC_45216.13	1425	2e-24	1006 - 1065	100	60 / 60	minus	ABC01488 ABC23356 ABC45008
MLOC	MLOC_45216.3	1554	2e-24	1135 - 1194	100	60 / 60	minus	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC	MLOC_45216.4	1884	2e-24	1465 - 1524	100	60 / 60	minus	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC	MLOC_45216.9	1333	2e-24	920 - 979	100	60 / 60	minus	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC	MLOC_45216.5	1219	2e-24	800 - 859	100	60 / 60	minus	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC	MLOC_45216.6	1349	2e-24	930 - 989	100	60 / 60	minus	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC	MLOC_45216.8	1963	2e-24	1544 - 1603	100	60 / 60	minus	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC	MLOC_45216.1	1134	2e-24	715 - 774	100	60 / 60	minus	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC	MLOC_45216.7	1966	2e-24	1547 - 1606	100	60 / 60	minus	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
MLOC	MLOC_45216.2	1017	2e-24	598 - 657	100	60 / 60	minus	ABC01488 ABC11000 ABC23356 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
JLOC1	JLOC1_29356.9	1507	8e-25	361 - 420	100	60 / 60	plus
JLOC1	JLOC1_29356.8	1414	8e-25	361 - 420	100	60 / 60	plus
JLOC1	JLOC1_29356.6	1498	8e-25	361 - 420	100	60 / 60	plus
JLOC1	JLOC1_29356.3	1381	8e-25	361 - 420	100	60 / 60	plus
Harvest21	ABC01488	1633	3e-25	946 - 1005	100	60 / 60	plus	ABC01488
Harvest35	U35_190	1632	3e-25	946 - 1005	100	60 / 60	plus

Contig Sequence (1632 bp)

>U35_190 1632 Hv_44K_v2
GCACAACGAACCTTCCCCCGTTCCCCTCGTCCTTCCAGATCCGATCGAAGCCTCCCCCCA
TTCCCCTCGTCCCCTCGGTCGCCGGCCGACCGCAACCCGGATCGCCGCGCCGACGGGTTT
TGCCTCCCTCCGGTCCGAAACTCCGGTCGCGGCAACGACACGCGTTCGTCCGAGGCATCT
GCTTCAGCGACTCTCCGGCACACGGAGACTGCCACACTTGGAGGGCGCGGCGGACACGCG
CATCGGGGGGTGGATGCACAAGGGGATCAGCGGCGGCCAGCGTCGGCGGGTCAGTATCTG
CATGGAGATCCTCACCCGACCGGCGCTGCTGTTCCTGGACGAGCCCACCAGCGGCCACCC
GCCGCCGCCGCCGCAGCAGCAGCCGCCTGCCTCGAGCCGCCGTTGCCATGGGGATTACCC
TCTCTCTCTCGCCCTTGCGTATGTTGACCTGGTTTAGCATTCGTCTGGTCGTAGCTATGG
TTCGTGCAATCATTTGAATCGGCGCTGTTGCGTGTGAATCCCTCCTCGTCGGCCTCCTTC
CGCCCCGAACCTTAAATCCCACGACCAGCCTCCCTCCCACCCAAACCCGCCATTCTCCTC
CGTGCATCGCCTCGCCTCCTCCGCGCTTCATCCATGGCAGCGAGGCATCGGGTCTCTGCC
GTGATCTTCGACCTCGATGGCACCCTCCTGGACACATGTATGCGGAATCGCTTGCTCTCA
CGCTCGCGCCGCCGTCCCGTTCCGTTCGATGCTCCGCCTAGTTCAGTCGATGTATACAAT
GCTCGAGTAGCTACACAAATACAATGATTTGTCTTTTCTGTTCGTGACGGGGTGCTTGGT
CATCTCCTCCAAGCCTACGTCCTGCATTCGAAATTCAGGATTTGTTGTGCAGAGGTGCTG
CCTTTCCAATAAATAAAGCAGAGTAAAAGTGCAATACGGAGTAGCTTAAAAAAGTTCGAT
ATGTATAGTTTGTAAAGTGTGGCGTGTCTTGGTGCAGAGAGGGAAAAAGGGACGTCCTGA
AAGAGTTCTTGGAGACCTACGGGAAGGTCCCAGATGCGGCCAAGGAGGAGAAGCGATTGG
GGCAGATGCACAGGGAGTCCACGACCGGGATCAACGCAGATTACGGGTTGCCGATCACTG
TCGAGGAATATTCAGAGGCAATATACCCGTTGTATATCAAAAGAACTGAAAGACTGCTTT
CTGGTGGTTCTTGGTGGTGATCAGGTCCCTCATGGAAAACCTTGCCCTGACATTTGTAAG
CAGCCAAAATGGTGAAGGTCTGCTGCATCGGAGCTGGCTACGTCGGCGGCCCAACAATGG
CTGTTATTGCCATCAAATGCCCGACAATTGAGGTGATGTGCGAATCCAAGTACGAAGCTG
TGAAGCATATCAGCAAAGAGTAGCATATTATGTGTTGTAATTGTAGGCAGTAGTAGGCTT
ATTTGGGCTGTAGTATAATGTAATGATTGTAATAGACTAATGTAGTGTTGTTTTGGATGA
ATTCCGTTTGCTCTTTGGATTGTTCAAAATAATAATTGTGTATGTGATTTGAATACCCCA
GAAATGGTAACTTGGAAAAGGGGTTCAAGTTATAATGGTTGTTTGACATATTTTGTAAAA
AAAAAAAAAAAA

Homology of Contig U35_190 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None