- Probe CUST_34600_PI390587928
- Source Contig U35_195
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_34600_PI390587928 | Hv_44K_v2 | CTACGTTTGGGTGAGGTGCATGTAAACTACGGCTATGCATAAAGAGAAATATACATGATA | 601 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK364796 | 4776 | 2e-24 | 2183 - 2242 | 100 | 60 / 60 | minus | ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC11228 ABC14500 ABC35392 ABC36259 ABC45928 |
MLOC | MLOC_44795.2 | 1219 | 2e-24 | 1104 - 1163 | 100 | 60 / 60 | plus | ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 |
JLOC1 | JLOC1_29061.1 | 4715 | 8e-25 | 3670 - 3729 | 100 | 60 / 60 | minus | |
JLOC1 | JLOC1_29060.1 | 6930 | 8e-25 | 3079 - 3138 | 100 | 60 / 60 | plus | |
Harvest21 | ABC00838 | 827 | 3e-25 | 735 - 794 | 100 | 60 / 60 | plus | ABC00838 |
Harvest21 | ABC00497 | 695 | 3e-25 | 602 - 661 | 100 | 60 / 60 | plus | ABC00497 |
Harvest35 | U35_350 | 831 | 3e-25 | 739 - 798 | 100 | 60 / 60 | plus | |
Harvest35 | U35_195 | 695 | 3e-25 | 602 - 661 | 100 | 60 / 60 | plus |
Contig Sequence (695 bp)
>U35_195 695 Hv_44K_v2 GCCTGCCTCTCCTATTAGCTATCAACGATGGCTCCCACTGTCATGTCGTCGGCAGCCACC GCCGTAGCACCCTTCCAGGGACTCAAGTCCACAGCTGGTCTCCCAGTCAGCCGCCTCTCC GGCAACGCGGCTGGCCTCGGCAGCGTCAGCAACGGCGGAAGAATCCGGTGCATGCAGGTC TGGCCGATTGAAGGCATCAAGAAGTTCGAGACTTTGTCTTACTTGCCACCGCTCTCCACG GAGGCACTCCTGAAGCAGGTCGACTACCTGATCCGCTCCAAGTGGGTGCCTTGTCTCGAG TTCAGCAAGGTGTTAAACGAAGTGGAGGAGGTCAAGAAGGAGTACCCTGACGCCTATGTC CGCATCATCGGATTCGACAACATGCGTCAGGTGCAGTGCGTCAGCTTCATCGCCTTCAAG CCACCAGGCTGCGAGGAGTCTGGCAAGGCCTAAACAAGCTAACTCCCTTTTATCATACAA CATGGTTTCGTGCCAGGTTCATTTTATTTCCCTTTTTACTTTTGTTCTGCTTGTGTATGT GTTCTCTCCCTGCAACTCGAGTTAACATTGTATGAGTACTACAATCATAAGAGTACTACA ACTACGTTTGGGTGAGGTGCATGTAAACTACGGCTATGCATAAAGAGAAATATACATGAT AAGAATTCCAGTGAATCTAAAAAAAGAAAAAAAAA
Homology of Contig U35_195 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | LOC_Os12g19381.1 | 176 | 3e-66 | protein|ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed |
Brachypodium v1_2 | Bradi5g04080.1 | 177 | 1e-73 | |
Arabidopsis v10 | None |