barSeed - Barley Seed Development Database

Probe CUST_33615_PI390587928

Source Contig U35_48097

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_33615_PI390587928	Hv_44K_v2	CTTTAGGTTAAGATTCCCTTTGTTTTAACATGATTATGATCCCTCAGTTGTGGGTCAAAA	13	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363216	1962	3e-21	1902 - 1958	98	56 / 57	plus	ABC05663 ABC05664 ABC06409 ABC06411 ABC15518 ABC17547 ABC18569 ABC20877 ABC22130 ABC41736
MLOC	MLOC_60050.1	1101	3e-21	115 - 171	98	56 / 57	minus	ABC05663 ABC05664 ABC06409 ABC06411 ABC15518 ABC17547 ABC18569 ABC20877 ABC22130 ABC41736
JLOC1	JLOC1_39129.3	1993	2e-21	1859 - 1915	98	56 / 57	plus
JLOC1	JLOC1_39129.2	1991	2e-21	1857 - 1913	98	56 / 57	plus
JLOC1	JLOC1_39129.1	1993	2e-21	1859 - 1915	98	56 / 57	plus
Harvest35	U35_48097	279	3e-25	14 - 73	100	60 / 60	minus

Contig Sequence (279 bp)

>U35_48097 279 Hv_44K_v2
TTTTTTTTTTTTTTTTTGACCCACAACTGAGGGATCATAATCATGTTAAAACAAAGGGAA
TCTTAACCTAAAGTTTGTTTAGCTTGCCCACCCTACCCAAATGCTTGCTACGTACAGTTG
AAAACAACAGCCCAATCATGCACGTTGCCAAAGGATTTTGTACGAGGACCCAGGAAATGT
CAATGGTGATCACCCAATCAATCAAAGTTGCCAGCTCGGACAAGCAGCAGGGGATCATGC
GGTCCCAACCCTGGAAACCCTGGGAACCTCAACGGGGAA

Homology of Contig U35_48097 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None