barSeed - Barley Seed Development Database

Probe CUST_31689_PI390587928

Source Contig U35_17601

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_31689_PI390587928	Hv_44K_v2	ATTGTTTAGCCCAAGCTATGCTGGTAGCCATCAAAATATGTCGTATTTTTGGTTTCTAAA	554	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76644.4	3775	7e-23	1483 - 1539	100	57 / 57	minus	ABC07668 ABC07669 ABC17988 ABC20754 ABC29282 ABC47338
MLOC	MLOC_76643.2	2089	7e-23	2 - 58	100	57 / 57	minus	ABC07668 ABC07669 ABC17988 ABC20754
MLOC	MLOC_76643.1	2474	7e-23	287 - 343	100	57 / 57	minus	ABC07668 ABC07669 ABC17988 ABC20754 ABC47338
MLOC	MLOC_76644.2	3575	7e-23	1484 - 1540	100	57 / 57	minus	ABC07668 ABC07669 ABC17988 ABC20754 ABC29282 ABC47338
MLOC	MLOC_76644.1	2856	7e-23	1484 - 1540	100	57 / 57	minus	ABC07668 ABC07669 ABC17988 ABC20754 ABC29282 ABC47338
MLOC	MLOC_76644.3	3570	7e-23	1484 - 1540	100	57 / 57	minus	ABC07668 ABC07669 ABC17988 ABC20754 ABC29282 ABC47338
MLOC	MLOC_76644.5	3679	7e-23	1483 - 1539	100	57 / 57	minus	ABC07668 ABC07669 ABC17988 ABC20754 ABC29282 ABC47338
MLOC	MLOC_76644.6	1927	7e-23	469 - 525	100	57 / 57	minus	ABC07668 ABC07669 ABC17988 ABC20754 ABC47338
MLOC	AK248174.1	5646	3e-21	5103 - 5159	98	56 / 57	plus	ABC07668 ABC07669 ABC17988 ABC20754 ABC38921 ABC47338
MLOC	MLOC_80643.8	1795	3e-21	1687 - 1743	98	56 / 57	plus	ABC07668 ABC07669 ABC17988
MLOC	MLOC_80643.7	1788	3e-21	1680 - 1736	98	56 / 57	plus	ABC07668 ABC07669 ABC17988
MLOC	MLOC_80643.4	1707	3e-21	1599 - 1655	98	56 / 57	plus	ABC07668 ABC07669 ABC17988
MLOC	MLOC_80643.5	1713	3e-21	1605 - 1661	98	56 / 57	plus	ABC07668 ABC07669 ABC17988
MLOC	MLOC_80643.6	3493	3e-21	1855 - 1911	98	56 / 57	plus	ABC07668 ABC07669 ABC17988 ABC29282 ABC47338
MLOC	MLOC_80643.3	4085	3e-21	1953 - 2009	98	56 / 57	plus	ABC07668 ABC07669 ABC17988 ABC29282 ABC47338
JLOC1	JLOC1_51109.4	3255	4e-23	1762 - 1818	100	57 / 57	plus
JLOC1	JLOC1_51109.3	3305	4e-23	1812 - 1868	100	57 / 57	plus
JLOC1	JLOC1_51109.2	2728	4e-23	1235 - 1291	100	57 / 57	plus
JLOC1	JLOC1_51109.1	3061	4e-23	1568 - 1624	100	57 / 57	plus
JLOC1	JLOC1_51108.1	3606	4e-23	1438 - 1494	100	57 / 57	minus
JLOC1	JLOC1_53697.6	3384	2e-21	1396 - 1452	98	56 / 57	plus
JLOC1	JLOC1_53697.5	3355	2e-21	1367 - 1423	98	56 / 57	plus
JLOC1	JLOC1_53697.4	3296	2e-21	1308 - 1364	98	56 / 57	plus
JLOC1	JLOC1_53697.3	3124	2e-21	1136 - 1192	98	56 / 57	plus
JLOC1	JLOC1_53697.2	3144	2e-21	1156 - 1212	98	56 / 57	plus
JLOC1	JLOC1_53697.1	3118	2e-21	1239 - 1295	98	56 / 57	plus
Harvest21	ABC07669	626	3e-25	15 - 74	100	60 / 60	minus	ABC07669
Harvest21	ABC07670	716	1e-23	519 - 575	100	57 / 57	plus
Harvest21	ABC07668	828	6e-22	346 - 402	98	56 / 57	plus	ABC07668
Harvest35	U35_17601	628	3e-25	555 - 614	100	60 / 60	plus
Harvest35	U35_17602	1191	1e-23	994 - 1050	100	57 / 57	plus
Harvest35	U35_17600	935	6e-22	346 - 402	98	56 / 57	plus

Contig Sequence (628 bp)

>U35_17601 628 Hv_44K_v2
TGACTTCATCTTTCCTGATTTGCTTTGAACATTGCACTTCTTAGACATTGTTTTCTCTGG
CCTTGGTAACTACATGTCCTTCCAGATATTTACATCGATGAGAGATAATATAGTTTGCTA
TCTGGAACTGGTGTTTCCCTAACTGATAGCAGATATTTACATGGATGAGAGATAATATAG
TTTGCTATCTGGAACTGGTGTTTCCCTAACTGATATCTCCCAGCCAAGTAGGCTTATCCT
ATCCCCTCACTGTTTGATGCATCATTTAGCTGTTCATAGGCAGCTTCGTTTCCCCAAAGC
AGAAGTTCAAACGGAGGTTTCTTGGTCACTGCAGGTCCTAACTGACGATTTAGGTCCAAC
CTGATGATGAATTGGATTGGTGGATGTAGAAGGTTCGAAGGTTGCTGCAGGGCATCAATC
TAGACGGGCCATCCTACAACCGAAAAAACCCAGTGCTCTCTATTTGATCTCTTGAAGAAG
CTTCTGTTGTCTTAGATGCTTTGTGCTTGTAGCATTGATTGTGTTTTTTTGCTTCCGCCT
TCTTGTGGTTGCAGATTGTTTAGCCCAAGCTATGCTGGTAGCCATCAAAATATGTCGTAT
TTTTGGTTTCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_17601 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None