barSeed - Barley Seed Development Database

Probe CUST_30465_PI390587928

Source Contig U35_31556

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30465_PI390587928	Hv_44K_v2	AAGCTGTCGCTGACGAGGGCGGTGTTCTACATCATCATGCAGTGCCTGGGCGCCATCTGC	329	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_80094.1	1170	2e-24	472 - 531	100	60 / 60	plus	ABC01216 ABC01219 ABC01222 ABC01223 ABC01225 ABC01226 ABC01228 ABC01230 ABC01235 ABC01237 ABC01242 ABC19393 ABC31055 ABC47730
MLOC	MLOC_80094.2	1506	2e-24	620 - 679	100	60 / 60	minus	ABC01216 ABC01219 ABC01222 ABC01223 ABC01225 ABC01226 ABC01228 ABC01230 ABC01235 ABC01237 ABC01242 ABC19393 ABC47730
JLOC1	JLOC1_53340.1	1919	8e-25	760 - 819	100	60 / 60	plus
Harvest21	ABC01242	1751	3e-25	1099 - 1158	100	60 / 60	minus	ABC01242
Harvest21	ABC01237	1647	3e-25	459 - 518	100	60 / 60	plus	ABC01237
Harvest35	U35_31686	440	3e-25	380 - 439	100	60 / 60	plus
Harvest35	U35_31556	404	3e-25	330 - 389	100	60 / 60	plus
Harvest35	U35_13831	1259	3e-25	491 - 550	100	60 / 60	plus
Harvest35	U35_13685	683	3e-25	594 - 653	100	60 / 60	plus

Contig Sequence (404 bp)

>U35_31556 404 Hv_44K_v2
ATCCGTTCCAGCTCAGGCGAGCCAGCGACCACCGGCCTCCGGCGAGGGCAGCAGCGATGG
AGGGCAAGGAGGAGGACGTGCGCCTCGGGGCGAACAAGTACTCGGAGCGGCAGCCCATCG
CCGAGTTCATGGCCACCTTCCTCTTCCTCTACGTCACCATCCTCACCGTCATGGGCTACA
GCGGCGCCGCCTCCAAGTGCGCCACCGTCGGCATCCAGGGCATCGCCTGGTCCTTCGGCG
GCATGATCTTCGCCCTCGTCTACTGCACCGCCGGCATCTCTGGCGGGCACATCAACCCGG
CGGTGACCTTCGGGCTGTTCCTGGCGAGGAAGCTGTCGCTGACGAGGGCGGTGTTCTACA
TCATCATGCAGTGCCTGGGCGCCATCTGCGGCGCCGGCGTGGTC

Homology of Contig U35_31556 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g44630.3	221	1e-65	protein\|aquaporin protein, putative, expressed
Brachypodium v1_2	Bradi5g18170.1	289	1e-65
Arabidopsis v10	AT1G01620.1	286	1e-61	\| Symbols: PIP1C, TMP-B, PIP1;3 \| plasma membrane intrinsic protein 1C \| chr1:225986-227176 REVERSE LENGTH=286