barSeed - Barley Seed Development Database

Probe CUST_28649_PI390587928

Source Contig U35_20327

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_28649_PI390587928	Hv_44K_v2	TATTACAAGATCCTGGGCCTCGAAAAGGACTGCACTGTCGAGGACGTGCGCAAGGCCTAC	639	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364796	4776	2e-24	3670 - 3729	100	60 / 60	plus	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC11228 ABC14500 ABC35392 ABC36259 ABC45928
MLOC	MLOC_5188.2	1573	2e-24	655 - 714	100	60 / 60	plus	ABC11228
MLOC	MLOC_5188.1	1897	2e-24	859 - 918	100	60 / 60	plus	ABC11228
JLOC1	JLOC1_3324.1	2129	8e-25	741 - 800	100	60 / 60	plus
Harvest21	ABC13766	754	3e-25	625 - 684	100	60 / 60	plus
Harvest35	U35_20327	769	3e-25	640 - 699	100	60 / 60	plus

Contig Sequence (769 bp)

>U35_20327 769 Hv_44K_v2
AAGAGGTTCGGGTCGTCGCGTCGTCGTTGCCCAATCCTCTCCCCATCTCCCCCACCTCTC
CTGCTCCGCGCCGTTGCCGATCTGGCCCCAGTCAACTCCGGCGAGATTGGATTGATTGGA
TTGAAGTAAACTGGACTGGAGCCGATCCGATCCGATCTGATCGGACTGTGCTGGCGTCTA
GAGAAGCTTGAGGAGGGCTCGCTCGCTGTCGCGGGCCACAGATCTGCCGCGTCCGCCATG
GATGGCAACAAGGACGACGCTGTCAAGGCCCTGCGCATCGGCAAGGACGCCCTCGACGCC
GGGGATACCGCCCGCGCCCTCAAGTTTCTGTCTAAGGCCAAGCGGCTGGACCCCTTGCTC
CCCATCGATCACCTCCTCAACCCGCTGCTCAACAAGGATGACCCGTCCTCCTCACCGGCC
TCGTCATCATCGTCATCTGCCCCACATCCCCCACCGCCTCCGCCGTCGCGAACTGCAGCG
ACAGCAGCAGAACCAATCGGGGCTGACGGCTTGAGAGAAAGGAAGCAGAAGGGCAAGAAG
AAGGATGGGGAGGAGGGCGGCGGTGATGCTGCTGGGTTGAGGACGTACACAGAGGAGCAG
CTGGAGGTGGTCCACCAGATCAAGAAGCACACTAGGGATTATTACAAGATCCTGGGCCTC
GAAAAGGACTGCACTGTCGAGGACGTGCGCAAGGCCTACCGCAAGCTCTCTCTCAAGGTG
CACCCTGACAAGAACAAGGCCCCTGGTGCGGAGGACGCCTTTAAGGCTG

Homology of Contig U35_20327 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g37560.3	381	4e-51	protein\|chaperone protein dnaJ 49, putative, expressed
Brachypodium v1_2	None
Arabidopsis v10	None