barSeed - Barley Seed Development Database

Probe CUST_2718_PI390587928

Source Contig U35_14209

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2718_PI390587928	Hv_44K_v2	TGGCTGTTCTTCATCCCTCGCTGCTATTGTACAACACACATGTATCAGCTCTTATGCAAC	1208	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_17871.1	1503	2e-24	1386 - 1445	100	60 / 60	plus	ABC00278 ABC00393 ABC00431 ABC00654 ABC00816 ABC00903 ABC25612
JLOC1	JLOC1_12344.1	1745	8e-25	854 - 913	100	60 / 60	minus
Harvest21	ABC00903	1306	3e-25	1209 - 1268	100	60 / 60	plus	ABC00903
Harvest35	U35_14209	1306	3e-25	1209 - 1268	100	60 / 60	plus
Harvest35	U35_14208	1252	3e-25	1127 - 1186	100	60 / 60	plus

Contig Sequence (1306 bp)

>U35_14209 1306 Hv_44K_v2
GGTGACCGCGAAGAAGAAGAAGAAACAGCAGGGGAGATATCAACCGAAGTTCTTGGAGTG
AAATGGCGACCGCCGGGAAGGTGATCAAGTGCAAAGCGGCGGTGGCCTGGGAGGCCGGGA
AGCCGCTGTCGATGGAGGAGGTGGAGGTGGCGCCGCCGCAGGCCATGGAGGTGCGCGTCA
AGATCCTCTACACCGCCCTCTGCCACACCGACGTCTACTTCTGGGAGGCCAAGGGCCAAA
CTCCGGTTTTTCCTAGGATCTTGGGCCATGAAGCTGGAGGCATTGTGGAGAGCGTCGGCG
AGGGCGTGACGGAGCTGGTGCCGGGAGACCATGTCCTCCCGGTGTTCACCGGAGAGTGCA
AGGAGTGTGCCCACTGCATGTCAGAGGAGAGCAACCTCTGTGACCTCCTCAGGATCAATG
TTGACCGTGGCGTGATGATCAGCGACGGGCAGCCCCGCTTCACCATCGACGGCAAACCCA
TCTTCCACTTCCTGGGGACGTCCACCTTCAGCGAGTACACCGTGATCCATGTCGGGTGCG
TCGCCAAGATCGACCCCGAGGCGCCCCTCGACAAAGTCTGCCTCCTTAGCTGTGGTATCT
CAACCGGCTCGGTGCGACGCTCAACGTCGCGAAACCGAAGAAGGGTATGGCGGTGGCGAT
TTTTGGTCTTGGAGCTGTAGGCCTCGCTCCATGGAAGGCGCCAGGTTGTCTGGCGCATCA
AGGATTATCGGCGTGGACTTGAACCCTGCAAAACACGAACAAGTAAGAAATTTGGCTGCA
CCGACTTTGTGAACCCCAAAGACCACACCAAGCCAGTGCAAGAGTGATCGTGGAGATGAC
CGATGGGGGAGTCGACCGGGCGGTGGAGTGCACAGGCAACGCCGACGCCATGATCTCCGC
CTTTGAATGCGTTCACGATGGTGGGGCGTGGCGGTGCTGGTGGGCGTGGCGCACAAGGAG
GCGGTGTTCAAGACCCACCCCATGAACTTCCTCAAGGAGAGGACGCTCAGGGGCACCTTC
TTCGGCAATTACAAGCCGCGCACCGGCCTCCCCGGCGTCGTCGACATGTACGTGAGGAAG
GAGCTGGAGCTGGACAAGTTCATCACCCACAGCGTGCCCTTCTCGCAGATCAACACGGCC
TTCGACCTCATGCTCAGGGGGGAAGGCCTGCGCTGCGTCATCAGGATGGAGGAGTAGAGT
AGAGCACCTGGCTGTTCTTCATCCCTCGCTGCTATTGTACAACACACATGTATCAGCTCT
TATGCAACCCCCCCTCCCTCTGTCTACTTATTCGAAATACCTATCA

Homology of Contig U35_14209 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g10510.2	315	2e-127	protein\|dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi4g22620.1	380	6e-130
Arabidopsis v10	AT1G77120.1	379	6e-105	\| Symbols: ADH1, ADH, ATADH, ATADH1 \| alcohol dehydrogenase 1 \| chr1:28975509-28977216 FORWARD LENGTH=379