barSeed - Barley Seed Development Database

Probe CUST_22018_PI390587928

Source Contig U35_30726

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22018_PI390587928	Hv_44K_v2	AGTTTCATCTCAGACTGAACTAAATACAAAGGAGCATCAGGCTGCAACAGTTATTCAATC	325	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361351	1800	2e-24	425 - 484	100	60 / 60	plus	ABC10757 ABC10758
MLOC	AK353868	1780	2e-24	350 - 409	100	60 / 60	plus	ABC10757 ABC10758
MLOC	MLOC_10327.1	678	2e-24	401 - 460	100	60 / 60	plus	ABC10758
MLOC	AK371747	2557	2e-23	2256 - 2313	100	58 / 58	plus	ABC08511 ABC12319 ABC15629 ABC24189 ABC26165 ABC40107 ABC40364 ABC40947
JLOC1	JLOC1_6752.1	1008	8e-25	404 - 463	100	60 / 60	plus
Harvest21	ABC30763	385	3e-25	326 - 385	100	60 / 60	plus
Harvest21	ABC51425	611	4e-24	534 - 591	100	58 / 58	plus
Harvest35	U35_30726	385	3e-25	326 - 385	100	60 / 60	plus
Harvest35	U35_49605	611	4e-24	534 - 591	100	58 / 58	plus

Contig Sequence (385 bp)

>U35_30726 385 Hv_44K_v2
GCGGAGGGAGCGCCCGCTCGCTCGTCGCCTCGTCGTCGGTGGTGGTGGTGGTGGCTCCNC
CCTCCCCCTCCGCGTCGCCCAAGTGTTANCTGGTAAATANAAGGGGAAAGGAGCTACCAT
GGGCATTTCATCCAAGTGGATCAAATCACTTGTCGGGATAAAAAAAACATGGAAAAGCTC
AGACTGGTGAAAGCAGCAAAGAAAGGAGCTCTGCCGCTCAAGTGCTACACAAACGGAAGC
ATTCCGTGGATACTGAAGGTGCCCTTGCAGTTGCAGAACACACAGTGCAAACTGAACCAT
TGGCTAGTGACACCAATACACAGACAGTTTCATCTCAGACTGAACTAAATACAAAGGAGC
ATCAGGCTGCAACAGTTATTCAATC

Homology of Contig U35_30726 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None