barSeed - Barley Seed Development Database

Probe CUST_20599_PI390587928

Source Contig U35_8351

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20599_PI390587928	Hv_44K_v2	CGACCTGTGTTTGGATGATCAAAATTCTGTTCAATTTGTTCTTCTCCACGGTTCAAAAAA	715	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248174.1	5646	3e-22	2456 - 2511	100	56 / 56	plus	ABC07668 ABC07669 ABC17988 ABC20754 ABC38921 ABC47338
MLOC	MLOC_26555.1	1030	3e-22	607 - 662	100	56 / 56	plus	ABC20754 ABC38921
JLOC1	JLOC1_18034.2	763	1e-22	340 - 395	100	56 / 56	plus
JLOC1	JLOC1_18034.1	881	1e-22	458 - 513	100	56 / 56	plus
Harvest21	ABC38921	563	3e-25	12 - 71	100	60 / 60	minus	ABC38921
Harvest35	U35_8351	786	3e-25	716 - 775	100	60 / 60	plus

Contig Sequence (786 bp)

>U35_8351 786 Hv_44K_v2
GACAATGCTTGTAGCGAGTCAAAAATCTTCTGGTTTGCTATCTATCTCTTTGTTGTTTGA
TCGGTTATATCTGTACTCTTGATCCCTGTGTTGGTCTTCCTATAAGTGTGTGGGTTGCAC
TGCAGGATTTATTTAGGAAGTCTGTGCCTACATATGCAAACCTNTGCTGTGTGTCTGTTG
CGGTGTCAGGTCAGTAACTGTTGGTTCGTTTGTGTTCCCATGCCGGATGGGATCTGATAT
GTGGAGATCACTATGATGGTGTATGTTCAAGGGGATTTTAGGTAGGTCAGATAACATGCC
TATTGCCCGTGTGGTCTTCTAGTTCTCATCACGAGTTCCATCATAATCAATATAAGGTGG
ATTAGAGGTATTGGTGGATTCTTATTGTAGCAGTTGATCTCGCTTTTGGTTTGTGTTTGT
GCTCCTTCAGATGCAGCAGAAGCAGGAAGTGGTTCCGCATAGATGAACCGAAAGGATGGT
GGTTTGGTTTCATATGGTCAGAGGTCTCCAGGGATGATGTTTGGTGTTGGACTGAAGTTT
TGGATCGCACATCAACCTGGAACTTGAGATCCGTGTTCAGATGATCCTCTGAATTTCACT
TCATTTCATTTGGATTCGTTCAGTTCTAGCCTAACTTTAATTTGGATTCATTGCTCGTTG
TCACAAATTGAGATTACTCGGCTTAGTGGGAGCGGCGTACTATCTTCTTGCTGACCGACC
TGTGTTTGGATGATCAAAATTCTGTTCAATTTGTTCTTCTCCACGGTTCAAAAAAAAAAA
AAAAAA

Homology of Contig U35_8351 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None