- Probe CUST_20150_PI390587928
- Source Contig U35_31103
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_20150_PI390587928 | Hv_44K_v2 | TCTACAACAGGGAGCACGCCTGGTCAGACCACTGGATCTTCTGGGTCGGCCCCTTCATCG | 611 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_80094.1 | 1170 | 2e-24 | 830 - 889 | 100 | 60 / 60 | plus | ABC01216 ABC01219 ABC01222 ABC01223 ABC01225 ABC01226 ABC01228 ABC01230 ABC01235 ABC01237 ABC01242 ABC19393 ABC31055 ABC47730 |
| MLOC | MLOC_80094.2 | 1506 | 2e-24 | 262 - 321 | 100 | 60 / 60 | minus | ABC01216 ABC01219 ABC01222 ABC01223 ABC01225 ABC01226 ABC01228 ABC01230 ABC01235 ABC01237 ABC01242 ABC19393 ABC47730 |
| JLOC1 | JLOC1_53340.1 | 1919 | 8e-25 | 1118 - 1177 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC47507 | 417 | 3e-25 | 304 - 363 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC31247 | 723 | 3e-25 | 612 - 671 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01242 | 1751 | 3e-25 | 741 - 800 | 100 | 60 / 60 | minus | ABC01242 |
| Harvest21 | ABC01237 | 1647 | 3e-25 | 817 - 876 | 100 | 60 / 60 | plus | ABC01237 |
| Harvest21 | ABC01232 | 600 | 3e-25 | 163 - 222 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01225 | 688 | 3e-25 | 394 - 453 | 100 | 60 / 60 | minus | ABC01225 |
| Harvest35 | U35_31103 | 723 | 3e-25 | 612 - 671 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_13888 | 1077 | 3e-25 | 279 - 338 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_13831 | 1259 | 3e-25 | 849 - 908 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_13761 | 585 | 3e-25 | 163 - 222 | 100 | 60 / 60 | plus |
Contig Sequence (723 bp)
>U35_31103 723 Hv_44K_v2 CCAAAGCCGCCCATCTCGTTCCGTTCCAGCTCAGGCGAGCCAGCGACCACCGGCCTCCGG CGAGGGCAGCAGCGATGGAGGGCAAGGAGGAGGACGTGCGCCTCGGGGCGAACAAGTACT CGGAGCGGCAGCCCATCGGCACGGCGGCGCAGGGGTCCGAGGACAAGGACTACAAGGAGC CCCCGCCGGCGCCGCTGTTCGAGCCCGGCGAGCTCAAGTCGTGGTCCTTCTACCGCGCCG GCATCGCCGAGTTCATGGCCACCTTCCTCTTCCTCTACGTCACCATCCTCACCGTCATGG GCTACAGCGGCGCCGCCTCCAAGTGGTCAAGGGGTTCCAGCAGGGCCTGTACATGGGCAA CGGCGGCGGCGCCAACGTGGTGGCGTCCGGCTACACCAAGGGCTCCGGGCTCGGCGCCGA GATCATCGGCACCTTCGTCCTCGTCTACACCGTCTTCTCCGCCACCGACGCCAAGAGGAA CGCCAGGGACTCCCACGTTCCCATCCTCGCCCCGCTGCCCATCGGGTTCGCCGTGTTCCT GGTCCACCTGGCCACCATCCCCATCACCGGCACCGGCATCAACCCGGCGAGGAGCCTCGG CGCGGCCATCATCTACAACAGGGAGCACGCCTGGTCAGACCACTGGATCTTCTGGGTCGG CCCCTTCATCGGCGCCGCGCTGGCCGCCATCTACCACCAGGTGGTCATCAGAGCGATCCC ATT
Homology of Contig U35_31103 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os02g44630.2 | 290 | 9e-77 | protein|aquaporin protein, putative, expressed |
| Brachypodium v1_2 | Bradi5g18170.1 | 289 | 5e-75 | |
| Arabidopsis v10 | AT4G23400.1 | 287 | 2e-74 | | Symbols: PIP1D, PIP1;5 | plasma membrane intrinsic protein 1;5 | chr4:12220792-12222155 FORWARD LENGTH=287 |