barSeed - Barley Seed Development Database

Probe CUST_19846_PI390587928

Source Contig U35_31482

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19846_PI390587928	Hv_44K_v2	AGTACGTGAAGCTGGGGTACCACCACCTGATCTCCCACGGCATGTACCTGCTGCTGTCGC	271	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363216	1962	2e-24	278 - 337	100	60 / 60	plus	ABC05663 ABC05664 ABC06409 ABC06411 ABC15518 ABC17547 ABC18569 ABC20877 ABC22130 ABC41736
MLOC	MLOC_60051.1	825	2e-24	521 - 580	100	60 / 60	minus	ABC05663
MLOC	MLOC_60051.2	812	2e-24	521 - 580	100	60 / 60	minus	ABC05663
MLOC	MLOC_60051.3	815	2e-24	521 - 580	100	60 / 60	minus	ABC05663
JLOC1	JLOC1_39129.3	1993	8e-25	233 - 292	100	60 / 60	plus
JLOC1	JLOC1_39129.2	1991	8e-25	231 - 290	100	60 / 60	plus
JLOC1	JLOC1_39129.1	1993	8e-25	233 - 292	100	60 / 60	plus
Harvest35	U35_31482	453	3e-25	272 - 331	100	60 / 60	plus

Contig Sequence (453 bp)

>U35_31482 453 Hv_44K_v2
ATCGGTGCCACGCACAGGGAGAGCGAGAGAGAGAGGGAAGGGGGGCGGCGGAGCGGCTCG
AGTCTTCTTCCGCTCCTCCTCGTCCTCCCACGCGGCGCGCAGCAGATCGGGTGTCTCCGT
CCGTCGCCGAGTCCGCCGCTTCTCCCGTCTGCCCTGCCTGGAATAATGGATACTCCGGCG
CCCAATGCCGCCAACACGCCGGCGCAGGCGGCGGCGGAGCCAGCAGCGCAGCCGCGGCTG
CTGCCGGATTTCCTCCAGTCGGTGCGGCTCAAGTACGTGAAGCTGGGGTACCACCACCTG
ATCTCCCACGGCATGTACCTGCTGCTGTCGCCGCTCATGGCGCTGGTGGCCGTTCAGCTG
TCCACCGTGTCCCCGAGCGACCTGGCCGACCTGTGGGAGCAGCTCCGGTTCAACCTCGTC
TCCGTGGTCGTCTGCTCCACCCTCCTCGTCTTT

Homology of Contig U35_31482 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None