barSeed - Barley Seed Development Database

Probe CUST_15731_PI390587928

Source Contig U35_13792

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15731_PI390587928	Hv_44K_v2	AGCTATTTGTCTACAGTGGATGAGAAATACTTGAACTGATAAGTTTATGAGCTCTGTCAA	667	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375520	755	2e-24	680 - 739	100	60 / 60	plus	ABC01030 ABC01040 ABC01042 ABC01048 ABC01086 ABC22044
Harvest21	ABC01086	757	3e-25	668 - 727	100	60 / 60	plus	ABC01086
Harvest35	U35_13792	757	3e-25	668 - 727	100	60 / 60	plus

Contig Sequence (757 bp)

>U35_13792 757 Hv_44K_v2
CCGCCGCGAGGGAGAGGAGGCGAAAAACCTCGGAGGCGGAGGGAGAGGGGACTAGGAGGA
GATGCAGATCTTCGTGAAGACGCTGACGGGGAAGACGATCACGCTCGAGGTGGAGAGCAG
CGACACCGTCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCACCAGACCA
GCAAAGGCTAATTTTTGCTGGAAAGCAGCTGGACGATGGACGGACATTAGCCGACTACAA
CATTCAGAAAGAGTCGACACTTCATTTGGTCCTGAGGCTCAGGGGTGGGACTATGATCAA
GGTGAAGACACTCACGGGTAAGGAAATCGAGATTGACATCGAGCCTACCGACACAATTGA
TAGGATCAAGGAGCGTGTCGAGGAAAAAGAGGGCATTCCCCCTGTTCAGCAGAGGCTCAT
TTATGCTGGGAAGCAACTTGCTGACGATAAAACTGCTAAAGATTACAACATTGAAGGTGG
TTCAGTGCTCCATCTTGTGCTTGCTCTGAGAGGTGGTCACTAGATACAGTTTCATTTCAA
CTAGGAATATATTCACAAGGAGAGCAGCTTTGTTTATGCTATTTTCGTCCTACCATTGTA
CTTGGCTTAAAATCATGCACTTGACATGATTGGAGTGGCAAGTTATCAGTATATAGGTAA
CTAAGGAAGCTATTTGTCTACAGTGGATGAGAAATACTTGAACTGATAAGTTTATGAGCT
CTGTCAACTAATTATTTGTCGCTAAAAAAAAAAAAAA

Homology of Contig U35_13792 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g25320.1	154	8e-88	protein\|ubiquitin family protein, putative, expressed
Brachypodium v1_2	Bradi4g30470.1	154	4e-88
Arabidopsis v10	AT1G31340.1	156	9e-88	\| Symbols: RUB1, NEDD8, ATRUB1 \| related to ubiquitin 1 \| chr1:11218076-11219417 REVERSE LENGTH=156