barSeed - Barley Seed Development Database

Probe CUST_15503_PI390587928

Source Contig U35_24592

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15503_PI390587928	Hv_44K_v2	TCCAAAACCTCACCACCTTGTTCGGCAAAAAGCAGCTCAGCATGACAGACATGGTTGCGC	579	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.974	0.813	0.742	0.588	1.392	1.198
Raw	2.983	3.074	3.654	3.783	3.899	3.168

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74605.1	1253	7e-23	551 - 610	98	59 / 60	plus	ABC02112 ABC02113 ABC02115 ABC02119 ABC02123 ABC18641 ABC50221
JLOC1	JLOC1_49723.1	1463	4e-23	561 - 620	98	59 / 60	plus
Harvest35	U35_24592	639	3e-25	580 - 639	100	60 / 60	plus

Contig Sequence (639 bp)

>U35_24592 639 Hv_44K_v2
TCGAGCACTGTTGGCCACTGGAAGCCATACCCAACTAGAGAAAAGTGAGGCAGAAGCACC
ACTAGTCGTTAGAGTAGCGATCGATGGCCTCTGCCTCTTGTCTTAGCTTAGTGGTGCTCG
TGGCAATGGCCTCGGCGGCGTCGGCGCAGCTGTCGTCGACGTTCTACGACACGTCGTGTC
CCAACGCGCTGGCCACCATCAAGGCCGGCGTGGCGGCCGCCGTGCAAAACGAAGCCCGCA
TGGGGGCGTCGCTGGTCCGGCTGCACTTCCACGACTGCTTTGTCGATGGATGTGACGGGT
CCGTTCTGTTGGCGGACACGGGGAGCTTCGTCGGCGAGCAGGGGGCTGCCCCGAACAAGA
ATTCCATTCGAGGCATGAACGTCATCGACAGCATCAAGACCCAGGTGGAGGCCGTGTGCA
AGCAGACCGTCTCCTGCGCCGACATCCTCGCCGTCGCCGCCCGTGACTCCGTCGTCGCGC
TGGGTGGGCCGACATGGACTGTTCTCCTGGGGAGGAGGGACTCCACCACTGCAAGCAAGA
CCAACGCGGAAAATGACCTGCCACCCCCTACCTTCGACCTCCAAAACCTCACCACCTTGT
TCGGCAAAAAGCAGCTCAGCATGACAGACATGGTTGCGC

Homology of Contig U35_24592 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g48010.1	316	5e-83	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi1g17860.1	321	2e-92
Arabidopsis v10	AT5G05340.1	324	2e-64	Peroxidase superfamily protein \| chr5:1579142-1580819 REVERSE LENGTH=324