barSeed - Barley Seed Development Database

Probe CUST_14103_PI390587928

Source Contig U35_50081

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_14103_PI390587928	Hv_44K_v2	TTTGTCTTTGTTTCTGCTGCATCTGGAGCAGTTGGTCAGATTGTCGGTCAACTTGCAAAG	472	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371747	2557	2e-24	835 - 894	100	60 / 60	plus	ABC08511 ABC12319 ABC15629 ABC24189 ABC26165 ABC40107 ABC40364 ABC40947
MLOC	AK370453	1200	2e-24	570 - 629	100	60 / 60	plus	ABC34597 ABC43043
MLOC	MLOC_35715.1	366	2e-24	258 - 317	100	60 / 60	plus	None
JLOC1	JLOC1_23018.1	349	8e-25	241 - 300	100	60 / 60	plus
Harvest21	ABC52100	535	3e-25	473 - 532	100	60 / 60	plus
Harvest35	U35_50081	535	3e-25	473 - 532	100	60 / 60	plus

Contig Sequence (535 bp)

>U35_50081 535 Hv_44K_v2
TCCGCGTCGCCCAGGTCGAGCTCGTCCTCCTCCCCTCTCCCTAAGTTGGATGAGGGGGAG
GGAGGACGACATGTCGCTCGTCAACGGCGGCGCCGTGCCGCTGCGCGTCCCCGAGGCCGC
CGCCGGCCCGGCCGTGCTGGTGAAGAACCTCTACCTCTCCTGCGACCCCTACATGCGCGG
CCGGATGCGGGACTTCCACGGCTCCTACATCCCCCCGTTCAAGCCCGGATCTGTTATAGA
AGGGTTGGGCGTGGCAAGAGTGGTGGACTCCACTCATCCGGGGTTCGTCGCCGGCGACAT
TGTTTCGGGAATGACTGGCTGGGAGGAATACAGCCTGATTGACAAGCCTGAACAGCTGAA
CAAGATTCAGCAAAGCGACATACCACTCTCCTACCATCTGGGGCTTCTCGGCATGCCTGG
TTTTACAACTTACGTTGGATTCTATGAAATCTGCTCACCGAAGAAAGGAGAGTTTGTCTT
TGTTTCTGCTGCATCTGGAGCAGTTGGTCAGATTGTCGGTCAACTTGCAAAGCTC

Homology of Contig U35_50081 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g66720.1	360	3e-101	protein\|NADP-dependent oxidoreductase, putative, expressed
Brachypodium v1_2	Bradi2g57440.1	356	2e-98
Arabidopsis v10	AT1G65560.1	350	1e-64	Zinc-binding dehydrogenase family protein \| chr1:24371608-24373673 REVERSE LENGTH=350