barSeed - Barley Seed Development Database

Probe CUST_13700_PI390587928

Source Contig U35_5559

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13700_PI390587928	Hv_44K_v2	GTAAGACGCTGTGGTTCTTCTTTCTCAGTGCTGGTAACCGGATGGTTCTTCTTTCTCAAA	1052	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364796	4776	7e-23	2028 - 2087	98	59 / 60	plus	ABC00308 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00965 ABC00997 ABC01004 ABC11228 ABC14500 ABC35392 ABC36259 ABC45928
Harvest21	ABC14500	1126	3e-25	1053 - 1112	100	60 / 60	plus	ABC14500
Harvest35	U35_5559	1126	3e-25	1053 - 1112	100	60 / 60	plus

Contig Sequence (1126 bp)

>U35_5559 1126 Hv_44K_v2
ATGAAGAAGCGCTACCGGTTCGAGTCAGCCGCCGTTCGCGCGCCGGAGTAGCCGGGGCGG
CCAGCGCCTCCGGTGGCCCGTCTTGGCGCTTCTTCGGCCGCATGGACGGGCTTCTCAAAG
GGCCCGCATCAGCCGGCTGCTCTGGCCAGCCGCTGGCGCACGCGGAGCCGAGTTGCGATG
GCATGGTCCTGCCGCGAGCGCCGCTGAAAGCAGAGCCGGAGATCGACGCCGAAGCAGACG
TCGCCCTCCAGCAGCCGCCGGACACAGCAGGGCTGTCCGAGCTACTGAATGCGGACGCCA
ACGGCTCCGCGACGGTGAAGGCCGTGGATCAGGCCACACACAAGGACAAGGAAAGCAGCA
GGGCGGCCGACAGCGACGCCGCAAATGTGAGCTCTCCGCGGAGCAAGGAGATTGAGGCGA
ACGACGACGGCGCCGAGGAGGTCGACGGCACGCCGAGAAAGAGGAAGGGCCCGGAGCTTG
ACGTCGCGAGGAGCATCGAGCTGCTGGCGAGCTCGTTCGTGAAGATCGAGCGGGCCAGGC
TGGAGGTGTACCGGGACACGGAGCGGATGAGGGCAGAGGCCGAGGTGAAGAAGGGCGAGA
TGGAGCTGAGGAGGACGGAGATCATGGCCAAGACGCAGCTGCAGATCGCCAGGCTCTTCG
CCAAGCGGCTCAAGGAGTGCGTCGGCAGCAGGAATGGCGGCAGCTCCTCTGAAATGGACA
CCCCCACCAAGAAAGGCGAAAATGGTTCAGGGTGACTGGCCAATCAAAGTAGCTGTGATT
CTCTTCCCTCGGCAATCGCTCGGGTTATAAACAGAAGATTGGTGTCTCGCTCTATTCATG
TGCGGAAAATGTATGTCTGATTGATTCAGCTTCACCATGAGTGAAGGCATGTTATATAGT
TAGCCGTAAAATCAAAACGCAATAACGGAAACTTCGGTTCCCCTTTCCAGCAGGGTCTTA
GAAGATGCAGTTTTACAATCAGGAGTAGTTTGCTAGTCCGAAATTTGTCAACTTGCATTC
CCGCCGAAGTGTTTTACTGACAACCATCGCTTGTAAGACGCTGTGGTTCTTCTTTCTCAG
TGCTGGTAACCGGATGGTTCTTCTTTCTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_5559 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g38570.1	337	5e-68	protein\|transcription factor like protein, putative, expressed
Brachypodium v1_2	Bradi4g37730.1	345	1e-75
Arabidopsis v10	None