barSeed - Barley Seed Development Database

Probe CUST_10281_PI390587928

Source Contig U35_42773

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10281_PI390587928	Hv_44K_v2	TTTCCAACTCAGACTTGTTAACTATTGTTTCATACTTTTGTTAGCATATCAGCAAGTCCG	316	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51332.1	1660	2e-24	1246 - 1305	100	60 / 60	plus	ABC01488 ABC23356 ABC30053 ABC37639 ABC38653 ABC40217 ABC45008 ABC45560 ABC47039
JLOC1	JLOC1_32787.1	1604	8e-25	1242 - 1301	100	60 / 60	plus
Harvest21	ABC38653	572	3e-25	317 - 376	100	60 / 60	minus	ABC38653
Harvest35	U35_42773	572	3e-25	317 - 376	100	60 / 60	minus

Contig Sequence (572 bp)

>U35_42773 572 Hv_44K_v2
TTTTTTTTTTTTTTTTTAACTTGAACCCCTTTGCCAGGTTACCTTTTTCGAGGTATTCAA
ATCACATACAAAATCATTATTTTGAAGAATCCAAAGAATCCAAAGAGCAAATGGAATTCG
TCCAAAACAACACTACATTAGTCTATTACAATCATTACATTATACTACAACCCAAATAAG
CCTACTACTGCCTACAACTACAATACATAATATGCTACTCTTTGGGGATATGCTTCACAG
CTTCGGACTTGGATTCGCACTTCACCTGTGCAAAAAATAAGAATGAACATATAAGAATAG
AAATGCTTCACAATTTCGGACTTGCTGATATGCTAACAAAAGTATGAAACAATAGTTAAC
AAGTCTGAGTTGGAAAAGGTAGAAGTAATTTAGCTCATCTTGTTATGTCAAGAATAGAAA
TCACTTGTAGATGGCATCTGCAATTCTGCATATACCTAGAGGTAATTTAGGTCATATTTT
TTTATGTCAATAATAGAAATCATATAGATTTTATTGAATAACATAGGAGAAAAAATGTTC
ACCAAATATGTATCACAAATTTGATGATGAAG

Homology of Contig U35_42773 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None