barSeed - Barley Seed Development Database

Probe ABC47834

Source Contig ABC47834

barSeed

Links

Affymetrix Source Sequence (638 bp)

>ABC47834 638
TCTACTCCTACTTGTATCCGCCAACTATGTAGAATCACCAGCAGCAGCATCAATCAATGG
CTGATAGATGTAATGACAGTTCTTGATTTTCCTAATCAATCCATCGAGCAGGTCGGCGCC
GGGACGATGAACCCCCTCACCTTCATCCGAGTGCTGGGCCGTTAGCCGTGGAACGTCGTC
TATGTGGAGCTGAGCGTGAGGCCCGACGACAACCCCTACGGCGACAACCCCAACAGGCTC
CAGCGCCACACCCAGTTCCAGGTGATTCTGAAGGCTGACCGGGTAACTCGCAGTCGCAGG
ACCTCTTCCTGCACAGCCTTTCAGCGTTAGGCATCAATGTTCGTGAACACGACTTCCGTT
TCGTCGAGGACAACTGGGAAAGTCCTGTAAAGTTCAAGCATATATATAAACCAGTAGCAT
AGCACAATCACAACTAAGCTCTTGTTAATAGTTAGCAGTATTACACTCCTTTAAATTAGT
GGTCACCACAAGACCTACTATTTTCCATATGTTGAGAAAAATAATCTTCTCCCATGCTCT
TTCTATTTTGGACATTCCGATTCGGTTACTTTACAGGTTCTTGCTTACACTGGGAATAAA
GAAGCTAAGAAGTTTTTCTTCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_35411.2	1272	0.0	214 - 835	100	622 / 622	CUST_27689_PI390587928 CUST_12396_PI390587928	ABC02387 ABC02395 ABC06493 ABC47834
AK372814	3841	0.0	1893 - 2530	99	631 / 638	CUST_12396_PI390587928 CUST_38825_PI390587928 CUST_27689_PI390587928 CUST_38826_PI390587928	ABC02387 ABC02395 ABC07309 ABC07310 ABC47834
AK367370	2529	2e-153	975 - 1268	100	294 / 294	CUST_12396_PI390587928 CUST_27689_PI390587928	ABC02387 ABC02395 ABC47834
MLOC_35411.1	1407	2e-153	214 - 507	100	294 / 294	CUST_27689_PI390587928 CUST_12396_PI390587928	ABC02387 ABC02395 ABC06493 ABC47834
MLOC_35411.3	1322	2e-153	213 - 506	100	294 / 294	CUST_12396_PI390587928 CUST_27689_PI390587928	ABC02387 ABC02395 ABC06493 ABC47834
MLOC_77683.1	1125	1e-96	498 - 771	90	252 / 280	CUST_33320_PI390587928	ABC02387 ABC47834
MLOC_77683.2	1137	1e-96	510 - 783	90	252 / 280	CUST_33320_PI390587928	ABC02387 ABC47834
MLOC_77683.3	1088	1e-96	456 - 729	90	252 / 280	CUST_33320_PI390587928	ABC02387 ABC47834
MLOC_77683.4	1076	1e-96	444 - 717	90	252 / 280	CUST_33320_PI390587928	ABC02387 ABC47834
MLOC_35411.4	816	2e-89	201 - 379	100	179 / 179	None	ABC02387 ABC02395 ABC06493 ABC47834
MLOC_63502.4	1208	1e-75	910 - 1087	96	170 / 178	CUST_28105_PI390587928	ABC02387 ABC02395 ABC47834
MLOC_63502.6	905	1e-75	639 - 816	96	170 / 178	None	ABC02387 ABC02395 ABC47834
MLOC_63502.1	995	1e-75	731 - 908	96	170 / 178	CUST_28105_PI390587928	ABC02387 ABC02395 ABC47834
MLOC_63502.5	832	1e-75	566 - 743	96	170 / 178	CUST_28105_PI390587928	ABC02387 ABC02395 ABC47834
MLOC_63502.3	1115	1e-75	822 - 999	96	170 / 178	None	ABC02387 ABC02395 ABC47834
MLOC_63502.2	1176	1e-75	912 - 1089	96	170 / 178	CUST_28105_PI390587928	ABC02387 ABC02395 ABC47834