barSeed - Barley Seed Development Database

Probe ABC06493

Source Contig ABC06493

barSeed

Links

Affymetrix Source Sequence (1820 bp)

>ABC06493 1820
CCACCCCACCCCACCTGGACGCCGAATCACCAAAAAGTAGTGCTGGGAGTTCTCGAGAGA
GAGAGCCAGCAAGGAGGCAGCGCGGAGGCCAGGCCACCGTCGCGTGGCGTCCCACCACCA
CCCTCCCTATCGGATCCCGCTGCGCGCAGATCCGCGAGCCCCGGCAATGGCTTCCACGCC
GGCGGACGGAGCAGGCGAGCCGGTCGAGGCCAAGGGCAAGGGGAAGGAGGAGGGGGAGAA
GAAGAAGGCGGGAGGAGGGGTGCTGGGGAGGATGTGGCGCGGGATCTTCGGCGGCCGCGA
GGACTACGAGAAGCGCCTGCAGTACCTGTCCAAGGAGGAGGCCGCCGTGCACGCGCGGAT
GCGCCGCCGGACCCAGTTCTCCCGCCGCACCGTCCGCAACATCATCGTCCTCTCCGTCCT
CGCCGAGGCTGTGGCTGTTGGTTATGCCATCATGATGACAAGAGACGAAGATCTCACTTG
GCAAATGAGGGCAATTCGAGTGCTGCCTATATTTGTTTTGCCTGCCATATCGTCTGTGGT
ATATTCAGCAGTTGTAAACTTCACAAGGATGCGTGAACGGAAAGATGAAAAAACACTGGA
AAAATTGAGAGCTGAAAGGAAGGCCAAGATTGATGAACTGAAAGAACGGACGAATTATTA
CCTTACACAACAGCTTATCCAGAAATATGATCTTGATCCAGCTGCAAAAGCTGCAGCAGC
TTCGGTTTTGGCATCTAAGCTGGGGGCGGATTCTGGCTTAAAAGTACATCTTGGGGAAGA
ACCAAATTTTGATGCGGCAGTGGTTATGAGCAACAATGCTGAGATACTGCCATCAGATGG
TGTGAGAAACAGGAAGCAACCCAATGCAAGAGGCAGCAGGACTGGAAGCACTACAGCTGC
TCATACTTCGGCACAAGGTGCTGAATCTAGCTCAACTCTTAATGCTGGCCTGGAAAACGT
ACAGCCTACAAGGGTTGTAGAACATTGTCAAGGCTCTGGGGCAAGTGATGGTGGATGGAT
TGCAAAAATCGCTGCCTTACTCGTAGGGGAGGACCCATCACAGTCGTACGCTCTGATCTG
TGGCAATTGCCATATGCATAATGGCTTGGCCCGGAAGGAAGATTACCCACACATTACGTA
CTATTGCCCACATTGTCATGCGCTAAACACATCAAAGAACTCGATGGGGCAATACTCAGG
CTCCAGCTCAGGCCCATCGACCCCAGTTGCTCCTGCTGATGGAATATCTGCTACAAGCTC
AGTAGTAGAGAGTGAATTAATTAACATGGCTACAGTGGAGGAGTTGCCAAATGAAGAACA
CACGGAGAAGAAAGTGGAGGCAAGTTGATGATGGTCCGTTACTATCACTGTTGATCTTTG
TGAAATTAGTTCATATCGCCTCGTTTGAACTGGTTTGAGCTGCAGATGTAGCACTGTTGT
AAAATTGGAAATAGGTGACTTATATGATCCACAGCAACCCAGTACAATAATTATTTAGCC
AGTTTGTCCATACATACTTGAGAGGACGAATTTTGTTGGCAATGGGGACTGCTGGAGTGG
CGAATGACAACCTGCCGCCTGACAAGTTGAGGTCGGGAAGCTATGAGGTGGAGGCGAGCA
GGTGAGATCAGTCGGAACATAGTAGTGGTGTAAAACATAGATATGATCGATGCTTCTATT
TTACCCATATTTGTGTCCAGTTGCTCCGTTGGAGATGGGAAATTTTGACAGTGTTTGGAC
ATTTACGGTCACAACTTATTTTTGTAATCTTGATTGATAGCACTAAGTTTTGCTGACTGA
TGTCTCACATCTTTGACGCG

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK365432	1682	0.0	2 - 1682	99	1678 / 1681	CUST_4082_PI390587928	ABC06493 ABC49748
AK364920	1641	0.0	2 - 1641	99	1638 / 1640	None	ABC06493 ABC49748
AK248488.1	1492	0.0	7 - 1492	99	1484 / 1486	None	ABC06493
MLOC_23723.1	1550	0.0	1 - 1295	99	1293 / 1295	None	ABC06493 ABC49748
MLOC_23723.2	1260	0.0	1 - 1113	99	1111 / 1113	None	ABC06493
MLOC_24871.1	270	7e-123	1 - 270	96	260 / 270	None	ABC06493
MLOC_30681.1	281	3e-121	1 - 279	95	265 / 279	None	ABC06493
MLOC_35411.3	1322	1e-119	1047 - 1322	95	262 / 276	CUST_27689_PI390587928 CUST_12396_PI390587928	ABC02387 ABC02395 ABC06493 ABC47834
MLOC_35411.1	1407	1e-119	1132 - 1407	95	262 / 276	CUST_27689_PI390587928 CUST_12396_PI390587928	ABC02387 ABC02395 ABC06493 ABC47834
MLOC_35411.2	1272	1e-119	997 - 1272	95	262 / 276	CUST_12396_PI390587928 CUST_27689_PI390587928	ABC02387 ABC02395 ABC06493 ABC47834
MLOC_35410.1	440	1e-119	165 - 440	95	262 / 276	None	ABC02387 ABC06493
MLOC_35411.4	816	1e-119	541 - 816	95	262 / 276	None	ABC02387 ABC02395 ABC06493 ABC47834
MLOC_62943.1	199	4e-90	1 - 199	97	193 / 199	None	ABC06493
MLOC_28890.1	256	2e-83	1 - 187	97	181 / 187	None	ABC06493
MLOC_30141.1	310	3e-81	134 - 310	98	174 / 178	None	ABC06493
MLOC_80888.1	269	9e-72	1 - 160	98	156 / 160	None	ABC06493
MLOC_77169.1	174	6e-64	31 - 173	98	140 / 143	None	ABC06493
MLOC_31232.1	120	3e-51	1 - 120	98	117 / 120	None	ABC06493