- Probe CUST_33320_PI390587928
- Source Contig U35_23975
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_33320_PI390587928 | Hv_44K_v2 | GACCCGGGGAACTCGCAGGATCTCTTCCTGCACAGCCTTTCAGCGTTAGGCATCAACGTT | 498 | GeneList: green MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.013 | 1.174 | 1.311 | 1.087 | 0.411 | 0.483 |
| Raw | 35.538 | 60.307 | 59.859 | 83.353 | 10.137 | 13.373 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_77683.1 | 1125 | 2e-24 | 545 - 604 | 100 | 60 / 60 | minus | ABC02387 ABC47834 |
| MLOC | MLOC_77683.2 | 1137 | 2e-24 | 557 - 616 | 100 | 60 / 60 | minus | ABC02387 ABC47834 |
| MLOC | MLOC_77683.3 | 1088 | 2e-24 | 503 - 562 | 100 | 60 / 60 | minus | ABC02387 ABC47834 |
| MLOC | MLOC_77683.4 | 1076 | 2e-24 | 491 - 550 | 100 | 60 / 60 | minus | ABC02387 ABC47834 |
| JLOC1 | JLOC1_51790.2 | 1120 | 8e-25 | 518 - 577 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_51790.1 | 1108 | 8e-25 | 518 - 577 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC18952 | 558 | 3e-25 | 499 - 558 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_23975 | 558 | 3e-25 | 499 - 558 | 100 | 60 / 60 | plus |
Contig Sequence (558 bp)
>U35_23975 558 Hv_44K_v2 CTCCTCTCCTTCCTCGTCGCCATGGCCGCGGCCACGGGCATGGCCGTCGCCGTCGCCATG CCTACTCCCCTCCTCTCTCCGCCCCCCGCCGCCACTCACCCCTTCGCCCTCACCGCTCCC GCTCCTCCGTCCACCCGCCCACGTCCACGCCGTCTCCTCGTGTCTTCCCCGGCGGCCCAC TCCGGCTCCCACGGGGCGCCGTCAGCGCTCTCCTCCTCCTCCGGCTCCGGCACCAAGGGG GGCGGCGCGCTCACCTTCCAGCAGGCCATCCAGCGGCTCCAGGAGTACTGGGCCTCCGTC GGATGCGCGGTCATGCAGTGCAGCAACACCGAGGTCGGCGCCGGGACGATGAACCCCCTC ACCTTCCTCCGGGTGCTGGGCCCTGAACCGTGGAACGTCGCCTATGTGGAGCCGAGCGTG AGGCCCGACGACAGCCGCTATGGCGACAACCCCAACAGGCTCCAGCGCCACACCCAGTTC CAGGTGATCCTGAAGCCTGACCCGGGGAACTCGCAGGATCTCTTCCTGCACAGCCTTTCA GCGTTAGGCATCAACGTT
Homology of Contig U35_23975 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os06g01400.1 | 1069 | 2e-62 | protein|glycyl-tRNA synthetase 2, chloroplast/mitochondrial precursor, putative, expressed |
| Brachypodium v1_2 | Bradi1g52330.2 | 852 | 4e-63 | |
| Arabidopsis v10 | AT3G48110.1 | 1067 | 1e-57 | | Symbols: EDD1, EDD | glycine-tRNA ligases | chr3:17763111-17770964 FORWARD LENGTH=1067 |