- Probe CUST_38825_PI390587928
- Source Contig U35_2464
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_38825_PI390587928 | Hv_44K_v2 | TTCAAGTCGCACCCAAAATGATAGTGTTCGTTCTGCGCAGATCGATACAAGGTACAATTT | 22 | GeneList: lightcyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.846 | 1.413 | 1.961 | 1.856 | 0.387 | 0.481 |
| Raw | 28.829 | 73.187 | 91.893 | 139.259 | 10.316 | 13.212 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK372814 | 3841 | 7e-23 | 1054 - 1114 | 98 | 60 / 61 | plus | ABC02387 ABC02395 ABC07309 ABC07310 ABC47834 |
| MLOC | MLOC_58947.2 | 1681 | 7e-23 | 1135 - 1195 | 98 | 60 / 61 | plus | ABC07309 ABC07310 |
| MLOC | MLOC_58947.3 | 1843 | 7e-23 | 1297 - 1357 | 98 | 60 / 61 | plus | ABC07309 ABC07310 |
| MLOC | MLOC_58947.1 | 1999 | 7e-23 | 1313 - 1373 | 98 | 60 / 61 | plus | ABC07309 ABC07310 |
| JLOC1 | JLOC1_38325.1 | 1834 | 4e-23 | 1110 - 1170 | 98 | 60 / 61 | plus | |
| Harvest21 | ABC07310 | 707 | 3e-25 | 626 - 685 | 100 | 60 / 60 | minus | ABC07310 |
| Harvest21 | ABC07309 | 1829 | 1e-23 | 1089 - 1149 | 98 | 60 / 61 | plus | ABC07309 |
| Harvest35 | U35_2464 | 707 | 3e-25 | 23 - 82 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_2463 | 1830 | 1e-23 | 1089 - 1149 | 98 | 60 / 61 | plus |
Contig Sequence (707 bp)
>U35_2464 707 Hv_44K_v2 GTTTGCAGTGCAAATGCCTATTTTCAAGTCGCACCCAAAATGATAGTGTTCGTTCTGCGC AGATCGATACAAGGTACAATTTGGACCTGTGTAAAAATGTTTATGGAGAAGGAGTTTATC CCGATGTGTTCATGACAAACTTATATTACGGAGGGACAAGTATTGCTGCTTCTAAAATTG TGTTCACAAATGGCTCTCAAGATCCATGGCGTCATGCCTCCAAACAGAAATCATCGGAAG GCATGCCATCATACATAATCAAATGTAGCAACTGCGGACATGGCACTGATTTGAGAGGAT GTCCCCAGCTTCCTTTCACGATTGAAGGTGACTCTTCAAACTGCACGTCCCCAGAAGCGG TGAACACAGTAAGGAAGCAGATCGTCAAGCACATCGACCTGTGGCTATCACAATGCCATG AGCCAGCAAGGTCAGGGTCTGGGACGCCTAGCCATTCGATGGCAAAACTGTGCAGTGATC GTGAGGGCGTGGTGAGGCGACGACGACTCGCACCTGTTTAGGAGGAGTAAAGAAGCAGTC TGTAGAGCAAGGACCGAAGGAACAATTGCAAGTTTGCGACATGCTGCGGAGACAGTGAAC CATATGCGGATTGACAAGCCGGTCCCGGATGCGATTGCGTGCAGGTTTGTTTCGATCATC ACATGGTTGTGCTTGTATTCCGGACGACTTGAGCCATCATGGCAACT
Homology of Contig U35_2464 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os10g36780.1 | 491 | 4e-75 | protein|OsProCP4 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed |
| Brachypodium v1_2 | Bradi3g30630.1 | 490 | 9e-81 | |
| Arabidopsis v10 | AT4G36195.1 | 488 | 5e-61 | Serine carboxypeptidase S28 family protein | chr4:17127202-17129787 FORWARD LENGTH=488 |