barSeed - Barley Seed Development Database

Probe ABC41788

Source Contig ABC41788

barSeed

Links

Affymetrix Source Sequence (594 bp)

>ABC41788 594
GAATGATGAAGATGTTCTTTGGGGACCCGATGTCATAGAAGCAAATGAGTCTGTTGCTGC
CAGGGGCATGAATCTGTTTGACTGGTTATGGACCAGAGAAGAGAAAGAGATAGCTATTGT
CAGCCATTGCGGTTTCTTGTATCACACCCTAAACATGTATGGCAAAGAGTGTCATCCAAC
CGTAGCAGAGGAACTGGGCAAGAGCTTTGCCAACTGTGAGCTCCGGTCGATGGTGCTGGT
CGACAGAAGTAACCTTGGATCGGATACCTCTACATACAACTTCGCTGGGAAGATACCGAC
CGGGCTCGATATGCCTAGCGATGTCGCAGACAAGAAGCACACTCAGTGACGGAGCCAGAA
ATTTTATGGAGCTTGGGCAAGTTAAGACTAAGTGCATAATAATCACACAAAATTTAATTT
TGAAGTAAGCTAATATATCAATATCCAAATAAAGTTGAGACATAACAACAAAAGATACAT
ATTCAGCTTTGCAAGAATAGAGATGGTCAGAATATTTGGAGGATACTCACAAATTTGTTT
TTTTTTTTCCTGGATCGCGCTTAATATCATTTGGATTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_66130.1	873	0.0	499 - 873	100	375 / 375	CUST_14129_PI390587928 CUST_18033_PI390587928	ABC05128 ABC05130 ABC05132 ABC05133 ABC41788
AK365712	1047	1e-175	610 - 952	99	340 / 343	CUST_18033_PI390587928 CUST_14129_PI390587928	ABC05128 ABC05130 ABC05132 ABC05133 ABC41788
AK252037.1	1158	9e-167	594 - 932	98	332 / 339	CUST_18029_PI390587928 CUST_14129_PI390587928	ABC05127 ABC05128 ABC05132 ABC05133 ABC41788
MLOC_13122.3	1219	9e-162	564 - 902	97	329 / 339	CUST_18029_PI390587928 CUST_14129_PI390587928	ABC05127 ABC05128 ABC05132 ABC05133 ABC41788
MLOC_13122.2	1477	9e-162	744 - 1082	97	329 / 339	CUST_18029_PI390587928 CUST_14129_PI390587928	ABC05127 ABC05128 ABC05132 ABC05133 ABC41788
MLOC_66130.2	777	4e-160	472 - 777	100	306 / 306	CUST_18033_PI390587928 CUST_14129_PI390587928	ABC05128 ABC05130 ABC05132 ABC05133 ABC41788
MLOC_18035.1	1160	6e-129	590 - 929	91	310 / 340	CUST_18027_PI390587928	ABC05127 ABC05128 ABC05132 ABC05133 ABC41788
MLOC_12779.1	1947	8e-98	369 - 709	86	293 / 342	CUST_18035_PI390587928	ABC05128 ABC05130 ABC05132 ABC05133 ABC41788
AK366182	1405	2e-94	580 - 920	85	291 / 342	CUST_18035_PI390587928	ABC05128 ABC05130 ABC05132 ABC05133 ABC41788
MLOC_13122.1	1717	2e-59	1186 - 1322	97	133 / 137	CUST_14129_PI390587928 CUST_18029_PI390587928	ABC05127 ABC05128 ABC05132 ABC05133 ABC41788
MLOC_42335.1	287	6e-84	1 - 178	98	176 / 179	CUST_18426_PI390587928	ABC41788
MLOC_42278.1	164	2e-73	1 - 162	98	158 / 162	None	ABC41788
MLOC_12779.2	1286	5e-70	276 - 524	86	215 / 250	CUST_18035_PI390587928	ABC05128 ABC05130 ABC05132 ABC05133 ABC41788