barSeed - Barley Seed Development Database

Probe CUST_18027_PI390587928

Source Contig U35_15999

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18027_PI390587928	Hv_44K_v2	TCTGATGATTTGTTGTTTGAACGCATACCCAAATTCATGGGAATAAGGACTTATGCGTAA	1168	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.601	2.627	1.188	0.820	0.416	0.541
Raw	1478.390	2339.924	930.275	1022.587	179.046	256.663

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18035.1	1160	6e-24	1096 - 1154	100	59 / 59	plus	ABC05127 ABC05128 ABC05132 ABC05133 ABC41788
JLOC1	JLOC1_12467.1	1290	3e-24	1097 - 1155	100	59 / 59	plus
Harvest21	ABC05132	1180	3e-25	1103 - 1162	100	60 / 60	plus	ABC05132
Harvest21	ABC05127	315	6e-22	241 - 300	97	58 / 60	plus	ABC05127
Harvest35	U35_15999	1243	3e-25	1169 - 1228	100	60 / 60	plus

Contig Sequence (1243 bp)

>U35_15999 1243 Hv_44K_v2
AGTCCCACCACCACCACCGCCCCGGCCCTCCGCCTCTGCCTCCCTATCTCGCCCCCGCCC
GCAGCAGCCTCGCCGTCGCCCCCCTCCCTCGCCGTCGGACGCGTTTCCCTCCGCCGTCGC
CGTCGCCGCCGCGCTTCCTTCAGCGGCCGCCGCTGCTCCTTGTCCTCAGAAATGGAGGCC
AGCGCTGGCACAGCTCTGTACCCTGCGCACCGATGCAAAACCATATACCTGGTCAGGCAT
GCCCAGGGTATTCACAACGTGGAAGGCGAGAAGGATTTTGCAGCGTACAAGTCACATGCG
CTGCTTGATGCTCAGCTTACCCCTTTGGGCTGGAGCCAAGTTGATACCCTGCGAGAGCAT
GTGACAAAATCTGGACTGGCAAAAAAGATTGAGTTGGTTGTTGTTTCCCCTCTACTGAGG
ACTTTGCAAACTGCAGTGGGGGTCTTTGGTGGTGGGAACTATACTGATGGAGCAAGTGCA
TCACCATTAATGGTAGAGGGTGCTGGAAACAGTGGACGTCAGCCGATTTCAAGTTTGAAC
TGCCCACCATTTCTTGCAGTTGAGGCCTGCAGGGAACATTTGGGTGTTCATCCCTGTGAC
AAGAGGAGCAGCATAACAAAATACCGTACTCTCTTTCCTGCCATTGATTTTTCCTTGATA
GAGAATGATGAAGACGTTCTCTGGGAACCTGATGTCAGAGAAACAAATGAGTCTGTTGCT
CTCAGGGGCATGAAGTTCTTTGACTGGTTATGGACAAGAAAAGAGAAAGAGATAGCCATT
GTCAGCCATAGTGGTTTCTTGTATCATACCCTAAACATGTACGGTAAAGAGTGTCATCCG
ACCATAGCAGAGGAACTGGGCAAGCACTTCGCCAACTGTGAGCTCCGGTCGATGGTGTTG
GTCGACAGAAGTAACCTGGGATCGGATAGCTCTACATACAACTTCGCTGGGAAGATACCG
GCCGGGCTCGATATGCCCAGCGATGTCGCGGACGAGAAGCACGCTGAAGAAGCTAGCAAG
AACTGAAGACCGTCGAGCACACGGATGTCTTTGATTCTTTACCAAACCCCGGTTCTGGCT
GACAATGAACTGAGAATAGATGAGCGACATGGATAGGACTTGCCGTCTGTTGCTCAGGTG
TATGATCGTCACGATTGGTTATGTTTTATCTGATGATTTGTTGTTTGAACGCATACCCAA
ATTCATGGGAATAAGGACTTATGCGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_15999 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g01230.2	276	4e-157	protein\|phosphoglycerate mutase, putative, expressed
Brachypodium v1_2	Bradi5g02400.3	340	0.0
Arabidopsis v10	AT5G64460.2	282	2e-136	Phosphoglycerate mutase family protein \| chr5:25773009-25775104 REVERSE LENGTH=282