barSeed - Barley Seed Development Database

Probe CUST_18029_PI390587928

Source Contig U35_15998

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18029_PI390587928	Hv_44K_v2	TGATCGTCACGATTGGTTATGTTTATCTGATTTGTTGTCTGAACGCATACCCAAATTCAT	1053	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.937	2.689	1.208	0.811	0.380	0.537
Raw	467.211	668.184	263.370	281.783	46.399	70.653

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252037.1	1158	2e-24	1075 - 1134	100	60 / 60	plus	ABC05127 ABC05128 ABC05132 ABC05133 ABC41788
MLOC	MLOC_13122.1	1717	2e-24	1464 - 1523	100	60 / 60	plus	ABC05127 ABC05128 ABC05132 ABC05133 ABC41788
MLOC	MLOC_13122.3	1219	2e-24	1044 - 1103	100	60 / 60	plus	ABC05127 ABC05128 ABC05132 ABC05133 ABC41788
MLOC	MLOC_13122.2	1477	2e-24	1224 - 1283	100	60 / 60	plus	ABC05127 ABC05128 ABC05132 ABC05133 ABC41788
JLOC1	JLOC1_8850.1	1324	8e-25	1045 - 1104	100	60 / 60	plus
Harvest21	ABC05133	1129	1e-23	17 - 76	98	59 / 60	minus	ABC05133
Harvest35	U35_15998	1156	3e-25	1054 - 1113	100	60 / 60	plus

Contig Sequence (1156 bp)

>U35_15998 1156 Hv_44K_v2
CTGACGNGCCTCCTCCACCACCACCACCTCCGCCGCCGCCGCACTTCGCGTAGCTCCTCC
TTCGCCTCCTCAGGAATGGCGGAGGCCAGCGCCGTCGCAGCCCTGTATCCCGCGCACCGA
TGCAAAACCGTGTACCTGGTGAGGCATGCCCAGGGTCTTCACAACGCGGAAGAAGAGAAG
GATGTTGTAGACTACACTTTACCTGCGCTGCTTGATGCCCAACTCACCCCTCTGGGCTGG
AGCCAAGTTGATTGCCTGCGAGAGCATGTGGCGAAATGTGGACTAGCAAAAAAAATTGAG
TTGGTTATTGTTTCCCCTCTAATGAGGACTCTGCAGACTGCAGTGGGGGTCTTTGGCGGT
GGAAGCTGTACTGATGGAGAAAGTACATCACCATTACTGATGGTAGAAGGTGCAGAAAAC
AGTGGGCGTCAGCCGATTTCAAGTTTGAACTGCCCACCGTTTCTTGCACTTGAGGCCTGC
AGGGAGCAGTTGAGTGTTCTTACCTCTGACAAGAGGAGCAGCATAACAAGATACCGTACT
CTCTTTCCTGCCATTGATTTTTCCTTGATAGAGAATGATGAAGATGTTCTTTGGGGACCC
GATGTCATAGAACCAAATGAGTCTGTTGCTGCCAGGGGCATGAATTTCTTTGACTGGTTA
TGGACCAGAGAAGAGAAAGAGATAGCTATTGTCAGCCATTGCGGTTTCTTGTATCACACC
CTAAACATGTATGGCAAAGAGTGTCATCCAACCGTAGCAGAGGAACTGGGCAAGAGCTTT
GCCAACTGTGAGCTCCGGTCGATGGTGTTGGTCGACAGAAGTAACCTTGGATCGGATACC
TCTACATACAACTTCGCGGGGAAGATACCGACCGGGCTTGATATGCCTAGCGATGTCGCA
GAGAAGAAGCAGGCTGAAGAAGCTAACAAGAACTGAAGACTGTCGAGCACATGGATGTCT
TTGATTCTTTTACCAAACCCCGGTTCTGGCTGACAATGAACTGAGAATAGATGAGCGACA
TGGACAGGACTTGCTGTTTATTGCTCAGGTGTATGATCGTCACGATTGGTTATGTTTATC
TGATTTGTTGTCTGAACGCATACCCAAATTCATGGGAATAAGGACTTATACGCATACACT
GAGAACGAGCACAATA

Homology of Contig U35_15998 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g01230.2	276	9e-138	protein\|phosphoglycerate mutase, putative, expressed
Brachypodium v1_2	Bradi5g02400.3	340	4e-156
Arabidopsis v10	AT5G64460.2	282	6e-111	Phosphoglycerate mutase family protein \| chr5:25773009-25775104 REVERSE LENGTH=282