- Probe CUST_18035_PI390587928
- Source Contig U35_15995
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_18035_PI390587928 | Hv_44K_v2 | AGAGGAGCAGCGTAACAGAATACCGTGCTCTCTTTCCTGCCATTGATTTTTTCTTGATAG | 505 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.154 | 1.088 | 1.040 | 0.874 | 0.516 | 0.448 |
| Raw | 101.593 | 147.711 | 125.480 | 169.981 | 34.179 | 32.631 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK366182 | 1405 | 7e-23 | 519 - 578 | 98 | 59 / 60 | plus | ABC05128 ABC05130 ABC05132 ABC05133 ABC41788 |
| MLOC | MLOC_12779.2 | 1286 | 7e-23 | 526 - 585 | 98 | 59 / 60 | minus | ABC05128 ABC05130 ABC05132 ABC05133 ABC41788 |
| MLOC | MLOC_12779.1 | 1947 | 7e-23 | 711 - 770 | 98 | 59 / 60 | minus | ABC05128 ABC05130 ABC05132 ABC05133 ABC41788 |
| JLOC1 | JLOC1_8589.2 | 1422 | 4e-23 | 544 - 603 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_8589.1 | 1862 | 4e-23 | 984 - 1043 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC05128 | 1309 | 1e-23 | 506 - 565 | 98 | 59 / 60 | plus | ABC05128 |
| Harvest35 | U35_15995 | 565 | 3e-25 | 506 - 565 | 100 | 60 / 60 | plus |
Contig Sequence (565 bp)
>U35_15995 565 Hv_44K_v2 GCTTCTTTCACCGCCGCCCCCGCCGTCTCCTCCTTCTCCGCCGCTCCTCCTCCCGCTGCA CCTGCCTCAGAAATGGAGGCCAGTTCTAGCACTGCCCTGTATCCTCAGCGCCGCTGCAAA AACGTATACCTGGTGAGGCATGCTCAGGGTATCCATAACGTGGAAGGCGACAAGGATCAT AGCGCCTACAAGTCGCCTGCGCTGGTCGATGCTCGCATCACCCCTTTGGGCTGGAGTCAA GTTGATTGCCTGCGAGAGCATGTGACAGAATGCGGACTAGCGAAAAAGATTGAGCTGGTT GTTGTTTCCCCTCTAATGAGGACTATGCAAACTGCAGTGGGGGTCTTTGGTGGTGAGAAC TGTACTGATGGAGTAAGTGCATCACCATTACTAATGGTAGAAGGTGCTGGACACAGTGGA CGTCAAGCGATTTCAAGTTTGAACTGCCCACCGTTTCTTGCAGTCGAGGCCTGCAGGGAG CGCCTGGGTGTTCATCCCTGTGACAAGAGGAGCAGCGTAACAGAATACCGTGCTCTCTTT CCTGCCATTGATTTTTTCTTGATAG
Homology of Contig U35_15995 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os04g01230.2 | 276 | 2e-85 | protein|phosphoglycerate mutase, putative, expressed |
| Brachypodium v1_2 | Bradi5g02400.4 | 288 | 4e-89 | |
| Arabidopsis v10 | AT2G17280.1 | 271 | 6e-69 | Phosphoglycerate mutase family protein | chr2:7513274-7514844 FORWARD LENGTH=271 |