- Probe CUST_14129_PI390587928
- Source Contig U35_50038
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_14129_PI390587928 | Hv_44K_v2 | TTACCTCTGTCAAGAGGAGCAGCATAACAAGATACCGTACTCTCTTTCCTGCCATTGATT | 511 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.207 | 1.243 | 1.174 | 0.869 | 0.456 | 0.461 |
| Raw | 75.328 | 119.785 | 100.245 | 118.915 | 20.948 | 24.077 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK365712 | 1047 | 2e-24 | 537 - 596 | 100 | 60 / 60 | plus | ABC05128 ABC05130 ABC05132 ABC05133 ABC41788 |
| MLOC | MLOC_66130.2 | 777 | 2e-24 | 399 - 458 | 100 | 60 / 60 | plus | ABC05128 ABC05130 ABC05132 ABC05133 ABC41788 |
| MLOC | MLOC_66130.1 | 873 | 2e-24 | 426 - 485 | 100 | 60 / 60 | plus | ABC05128 ABC05130 ABC05132 ABC05133 ABC41788 |
| MLOC | AK252037.1 | 1158 | 7e-23 | 521 - 580 | 98 | 59 / 60 | plus | ABC05127 ABC05128 ABC05132 ABC05133 ABC41788 |
| MLOC | MLOC_13122.1 | 1717 | 7e-23 | 671 - 730 | 98 | 59 / 60 | plus | ABC05127 ABC05128 ABC05132 ABC05133 ABC41788 |
| MLOC | MLOC_13122.3 | 1219 | 7e-23 | 491 - 550 | 98 | 59 / 60 | plus | ABC05127 ABC05128 ABC05132 ABC05133 ABC41788 |
| MLOC | MLOC_13122.2 | 1477 | 7e-23 | 671 - 730 | 98 | 59 / 60 | plus | ABC05127 ABC05128 ABC05132 ABC05133 ABC41788 |
| JLOC1 | JLOC1_43564.2 | 831 | 8e-25 | 385 - 444 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_43564.1 | 871 | 8e-25 | 425 - 484 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_8850.1 | 1324 | 4e-23 | 492 - 551 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC52041 | 615 | 3e-25 | 512 - 571 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC05133 | 1129 | 1e-23 | 571 - 630 | 98 | 59 / 60 | minus | ABC05133 |
| Harvest35 | U35_50038 | 615 | 3e-25 | 512 - 571 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_15998 | 1156 | 1e-23 | 500 - 559 | 98 | 59 / 60 | plus |
Contig Sequence (615 bp)
>U35_50038 615 Hv_44K_v2 TTGCCAAGGAAAAATCAAGCAGCGGAAGACGACACGGCTGACGGCCTCCTCCACCATCGC CGCCGCCGCACTTCGTGTAGCTCCTCCTCAGAAATGGAGGCCAGCGCCGCCGCAGCTCTG TATCCCGCGCATCGATGTAAAAACTTATACCTGGTGAGGCATGCCCAGGGTGTTCACAAC GTGGAAGAAGAGAAGGATGTTGTAGACTACACTTTACCTGAGCTGCTTGATGCTCAACTC ACCCCTCTGGGATGGAGCCAAGTTGATTGCCTGCGAGAGCATGTGAAGAAATGTGGACTA GCAAAAAAGATTGAGTTGGTTATTGTTTCCCCTCTAATGAGGACTATGCAAACTGCAGTG GGGGTGTTTGGTGGTGGGAACTATACAGATGGAGTAAGTGCACCCCCATTAATGGTAGAA GGTGCAGAAAACAGTGGACGTCAGCCGATTTCAAGTTTGAACTGCCCACCATTCCTTGCA GTTGAGGCCTGCAGGGAGCACTTGGGTGTTCTTACCTCTGTCAAGAGGAGCAGCATAACA AGATACCGTACTCTCTTTCCTGCCATTGATTNTTCCTTGATAGAGAATGATGAAGATGTT CTTTGGGGACCCGAT
Homology of Contig U35_50038 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os04g01230.2 | 276 | 7e-85 | protein|phosphoglycerate mutase, putative, expressed |
| Brachypodium v1_2 | Bradi5g02400.4 | 288 | 4e-89 | |
| Arabidopsis v10 | AT5G64460.2 | 282 | 5e-66 | Phosphoglycerate mutase family protein | chr5:25773009-25775104 REVERSE LENGTH=282 |