barSeed - Barley Seed Development Database

Probe ABC16814

Source Contig ABC16814

barSeed

Links

Affymetrix Source Sequence (1779 bp)

>ABC16814 1779
TGCATCCGATTAATGGAGGAAATAGTAATCGACTCTGTTGATTCTGAGAGTCTCTAGTCT
CCCATCAAATAACCATTTATAGATGGTTTGTGTTATTGGACTAAAAATATGGAGTGGCAA
TGGGTATTCGGCACAAAATTGGGAGGGCCTGCAAGAAAATAAGTCCACCGTAATATGCAC
TATGCGCCGGGCTATCTATGACCCTGGTGTAGTAACTATAGTACACATCACAAAGTTGGA
GAACATATTGTATTAGTACAAGCTAATCTTAAGGTTAATTTCTAGGCCAATCTCATATTT
TATTAGTACAAAACAACAAGTTTGAGCAGATCAGTATATCTTTTGGGAACAGGACAACAT
GCAGGCTAATTTTCTGTCGTTGATCGATGAATGTTGGGTCAATTTCAACAATTTATGAGA
GAAGACATGTCACATGATCCTGTAGTAATGAAGATGATAAGGGTAATTTGTGTCATGTCA
CATTCTTGCAAAACAAAAATTGTGGCATGTCACATTCAGAATTCAAACCACACCTTTCTC
CTCCGATTTTCCACACACACAGAGTTGATCTTGCATACAATCACAGGACGGCTTCTCTCC
ACCAAATAAGGTCTATAAATTGGCGCCATAATCCATGAGGCAATAGGCATCGAGATCAAC
CAGACCGTGCCTACACTGAGAATGAGAGGCCCGAGTGTGGTGGTGGCCATCGTGGCCATC
GTCCTGTCGGCGGCGCTCGCCATGGCCATGGTGGTCCGCGCACAGCAGTGTGGCTCGCAG
GCCGGCGGCGCGACGTGCCCGAACTGCCTCTGCTGCAGCCGCTTCGGTTACTGCGGCAGC
ACCTCCGACTACTGCGGCGCCGGCTGCCAGAGCCAGTGCAGCGGCTGCGGCCCCACCCCT
CCCGGCCCCAGCCCCGGCGGGGGCGTGTCGTCCATCATCTCCAGGGACCTCTTCGAGCAG
TTCCTCCTCCACCGCGACCGATGCCAAGATGCCGCCGGGTTCTACACGTACGACGCATTC
CTGGCCGCCGCCGCCACGTTCCCGGCCTTCGGCACCACGGGGAGCACCGAGACGCGGAAG
CAGGAGGTGGCGGCCTTCTTCGGGCAGACCTCCCATGAGACCACCGGCGGTTGGGCCACC
GCGCCTGACGGCCCCTACTCCTGGGGCTACTGCTACAGGCGGGAGCTGGGCTCGCCGCCC
GACTACTGCCAGCCATCCTCCCAGTGGCCGTGCGTGCAAGGCAGGCAGTACTACGGCCGC
GGCCCCATCATGCTCTCATGGAACTACAACTACGGCCCTGCCGGGCGCGCCATCGGCGTG
GACCTGCTCAACAACCCGGACCTGGTGGCCACGGATGCCACCGTGTCCTTCAGGACGGCA
CTATGGTTCTGGATGACGCCGCAGGCCAACAAGCCGTCCTCTCACGCCGTGATCACGGGC
CAATGGACGCCGACGGCCGCAGACAACGCGGCGGGGAGGGTGCCCGGCTATGGCGTCATC
ACCAACATCATCAACGGCGGGCTCGAGTGCGGCAGGGGGGCGGACAGCCGTGTTGCCGAC
CGGATCGGCTTCTACCAGCGCTACTGCAACATCCTTGGCGTCGGCTACGGGGGCAACCTC
GACTGCTACAACCAGAGGCCCTTCGTCGAGGGGCTTCTGATTCAGCGAGTAACGGAGTAA
CAACATATATACATACTACCATCTAAACGTATGAGTCCTCGATCCATGCATGCCTGTACG
TGTGCATGTCATTACTGATAAATAATCTCGAGGACTAGT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_71324.1	1213	0.0	94 - 1213	98	1115 / 1133	CUST_15308_PI390587928	ABC04174 ABC07001 ABC16814
AK359705	1227	0.0	109 - 996	83	743 / 892	None	ABC02518 ABC04174 ABC16814 ABC25195
AK370843	1200	0.0	114 - 1001	83	743 / 892	None	ABC02518 ABC04174 ABC16814 ABC25195
AK367914	1340	0.0	127 - 1005	83	741 / 890	CUST_41520_PI390587928	ABC02517 ABC02518 ABC04173 ABC04174 ABC07001 ABC16814
AK358661	1247	0.0	139 - 1035	80	724 / 902	CUST_40543_PI390587928	ABC02517 ABC02518 ABC03576 ABC03578 ABC04173 ABC04174 ABC07001 ABC16814 ABC29038
AK376513	1152	8e-152	127 - 1023	78	705 / 904	CUST_37871_PI390587928	ABC02517 ABC02518 ABC02519 ABC04174 ABC07001 ABC16814
MLOC_16320.1	771	3e-111	244 - 765	81	423 / 524	CUST_40543_PI390587928	ABC03576 ABC03578 ABC04173 ABC04174 ABC07001 ABC16814 ABC29038
MLOC_66550.1	414	2e-54	25 - 222	86	176 / 204	None	ABC04174 ABC16814