barSeed - Barley Seed Development Database

Probe CUST_40543_PI390587928

Source Contig U35_17346

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40543_PI390587928	Hv_44K_v2	CACAAGATGCGCATGTAGTCGATTAATAATGCAATATACGATATGTTCCTATCGCAAAAA	1140	GeneList: orangered4 MasterList: Pathogenesis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.979	3.448	0.734	0.921	1.608	0.866
Raw	9.778	49.163	9.470	20.725	11.765	5.699

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358661	1247	3e-22	1158 - 1213	100	56 / 56	plus	ABC02517 ABC02518 ABC03576 ABC03578 ABC04173 ABC04174 ABC07001 ABC16814 ABC29038
MLOC	MLOC_16320.1	771	3e-22	66 - 121	100	56 / 56	minus	ABC03576 ABC03578 ABC04173 ABC04174 ABC07001 ABC16814 ABC29038
JLOC1	JLOC1_11238.1	788	1e-22	74 - 129	100	56 / 56	minus
Harvest21	ABC29038	275	3e-25	204 - 263	100	60 / 60	plus	ABC29038
Harvest21	ABC07001	1209	1e-23	1141 - 1201	98	60 / 61	plus	ABC07001
Harvest35	U35_17346	1212	3e-25	1141 - 1200	100	60 / 60	plus

Contig Sequence (1212 bp)

>U35_17346 1212 Hv_44K_v2
ACACCACTACACGAGCAGTGTGACACTAGCTAGTAAGTAGTAACTACAGCAGCAGCCGTG
ATGAGAGGACTTGTGGTGGTGGCCATGCTGGCCGCGGCCTTCGCCGTATCTGTACACGCC
GAGCAGTGCGGCTCGCAGGCCGGCGGGGCGACGTGCCCCAACTGCCTCTGCTGCAGCAGG
TTCGGCTTCTGCGGCTCCACCTCCGACTACTGCGGCACCGGCTGCCAAAGCCAGTGCAAC
GGCTGCGGCGGCGGCGGCACCCCGGTACCGGTACCGCCCCCCTCCGGCGGCGGCGTGTCC
TCCATTATCTCGCAGTCGCTCTTCGACCAGATGCTGCTGCACCGCAACGATGCGGCGTGC
CAGGCCAAGGGGTTCTACAACTACGGCGCCTTCGTCGCCGCCGCCAACTCGTTCCCGGGC
TTCGCGACCACGGGTGGCACCGACGTCAGGAAGCGCGAGGTGGCCGCGTTCCTCGCACAG
ACCTCCCACGAGACCACCGGCGGGTGGCCGACGGCGCCCGACGGCCCCTACTCCTGGGGC
TACTGCTTCAACCAGGAGCGCGGCGCCACCTCCGACTACTGCACGCCGAGCTCGCAGTGG
CCGTGCGCGCCGGGCAAGAAGTACTTCGGGCGCGGGCCCATCCAGATCTCCCACAACTAC
AACTACGGGCCGGCAGGGCGGGCCATCGGCGCCGACCTGCTCAACAACCCGGACCTCGTG
GCGACGGACGCGACCGTGTCCTTCAAGACGGCGTTGTGGTTCTGGATGACGCCGCAGTCA
CCCAAACCTTCGAGCCACGACGTGATCACCGGCCGGTGGAGCCCCTCGGGCACCGACCAG
GCGGCAGGGAGGGTGCCTGGGTACGGCGTGATCACCAACATCATCAACGGTGGGCTCGAG
TGCGGGCGCGGGCAGGACGCCCGCGTAGCCGACCGGATCGGGTTCTACAAGCGCTACTGC
GATCTCCTCGGCGTCAGCTACGGAGACAACCTGGACTGCTACAACCAGAGGCCGTTCGCA
TAGTCAATCGACTATATGAAGGCACAAGACAGCAGGCAATAAAATCTCTAAATATTGTAA
CTATGGCGTTGCGATAGACTTCGCCTAGTACAAGCCAATATAAATAATGATGCGATCCAT
CACAAGATGCGCATGTAGTCGATTAATAATGCAATATACGATATGTTCCTATCGCAAAAA
AAAAAAAAAAAA

Homology of Contig U35_17346 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g51060.1	350	2e-163	protein\|CHIT8 - Chitinase family protein precursor, expressed
Brachypodium v1_2	Bradi2g47210.1	323	0.0
Arabidopsis v10	AT3G12500.1	335	8e-147	\| Symbols: ATHCHIB, PR3, PR-3, CHI-B, B-CHI, HCHIB \| basic chitinase \| chr3:3962501-3963984 REVERSE LENGTH=335