barSeed - Barley Seed Development Database

Probe ABC02518

Source Contig ABC02518

barSeed

Links

Affymetrix Source Sequence (1196 bp)

>ABC02518 1196
GACACTGTTGGACCACAAGATATCGGTTCGTTGCCACGCACGATGAGAGCGTTCGTGTTG
TTCGCCGTGGTTGCCATGGCGGCCACCATGGCCGTCGCCGAGCAGTGCGGCTCGCAGGCC
GGCGGGGCGACCTGCCCCAACTGCCTCTGCTGCAGCCGCTTCGGCTGGTGCGGCTCCACC
CCGGACTACTGCGGCGACGGATGCCAGAGCCAGTGCACCGGCTGCGGCGGCGGCAGCACG
CCCGTCACGCCCACCCCATCGGGCGGCGGCGGCGTGTCCTCCATCGTCTCACGCGCCCTC
TTCGACCGCATGCTTCTCCACCGCAACGACGGCGCCTGCCAGGCCAAGGGCTTCTACACC
TACGACGCCTTCGTCGCCGCCGCATCCGCCTTCCGGGGCTTCGGCACCACCGGCGGCACC
GACACCCGGAAGCGCGAGGTGGCCGCCTTCCTGGCCCAGACCTCCCACGAGACCACCGGC
GGGTGGGCGACGGCACCGGACGGAGCTTTCGCCTGGGGCTACTGCTTCAAGCAGGAGCGT
GGCGCCACCTCCAACTACTGCACTCCGAGCGCGCAGTGGCCGTGCGCCCCAGGGAAGAGC
TACTACGGCCGTGGGCCGATCCAGCTCTCCCACAACTACAACTACGGGCCTGCGGGCCGG
GCCATAGGGGTCGACCTCCTGCGCAACCCGGACCTGGTGGCCACGGACCCGACCGTGTCG
TTTAAGACTGCGATGTGGTTTTGGATGACGGCCCAGGCGCCAAAGCCGTCGAGCCATGCT
GTGATCACGGGCCAGTGGAGCCCATCAGGGACGGACCGGGCAGCGGGCCGGGTGCCCGGG
TTTGGCGTGATCACCAACATCGTCAACGGCGGGATCGAGTGCGGGCATGGGCAGGACAGC
CGAGTCGCCGACCGGATCGGGTTTTACAAGCGCTACTGCGACATCCTCGGCGTTGGCTAC
GGCAACAACCTCGACTGCTACAACCAAAGGCCCTTTGCTTAATTAATTAGTTATACATAA
CCCCGCACACAAAATTCAATAAGAGCATCGTGTGCTATCAGAGCATGGCGTAAGTTGTAA
CTATGGTTACTTCTCATGAGAATCTCAATAAAAGCATGGTTACTTCTAAAAAAAAAAAAA
AAAAGCATCCAGTATAGATGCTTTGGTATTGAGGTTTATAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK376513	1152	0.0	28 - 1133	97	1085 / 1116	CUST_37871_PI390587928	ABC02517 ABC02518 ABC02519 ABC04174 ABC07001 ABC16814
MLOC_6800.1	749	0.0	1 - 639	97	632 / 649	CUST_37871_PI390587928	ABC02517 ABC02518 ABC02519 ABC04174
MLOC_6801.1	1331	0.0	407 - 1239	89	740 / 836	CUST_37872_PI390587928	ABC02517 ABC02518 ABC02519
AK358661	1247	0.0	134 - 1030	84	760 / 904	CUST_40543_PI390587928	ABC02517 ABC02518 ABC03576 ABC03578 ABC04173 ABC04174 ABC07001 ABC16814 ABC29038
AK367914	1340	2e-166	124 - 1001	79	714 / 902	CUST_41520_PI390587928	ABC02517 ABC02518 ABC04173 ABC04174 ABC07001 ABC16814
AK359705	1227	1e-157	109 - 998	78	710 / 908	None	ABC02518 ABC04174 ABC16814 ABC25195
AK370843	1200	1e-157	114 - 1003	78	710 / 908	None	ABC02518 ABC04174 ABC16814 ABC25195
MLOC_35512.1	1178	1e-143	9 - 661	81	534 / 658	CUST_41520_PI390587928	ABC02517 ABC02518 ABC04173 ABC04174 ABC07001
MLOC_36011.1	237	2e-106	1 - 226	98	221 / 226	None	ABC02518
MLOC_34447.1	691	3e-104	1 - 386	85	331 / 391	None	ABC02518 ABC07001
MLOC_33395.1	314	2e-51	201 - 314	99	113 / 114	None	ABC02518