barSeed - Barley Seed Development Database

Probe ABC03576

Source Contig ABC03576

barSeed

Links

Affymetrix Source Sequence (1313 bp)

>ABC03576 1313
CCGAATTCAATGCCGAAGACGCGTGCAGGCGTAGCGTAATTGCTATATCATCCTAGCATA
AAATGGCGAACTCGGCGCCTCGATTCGTTCATCTGGCAGCCAGCAGCGACCATGTCCGCG
CTGAGAGCACCTTGTGCGACGGCCATCCTGGTCGCCGTCCTGGCGGCGGCCGCGGTGGAG
CTGGCCATGGCGCAGCAGTGCGGCTCGCAGGCCGGCGGCGCCAAGTGCGCCAACTGCATG
TGCTGCAGCCAGTTCGGGTTCTGCGGCAGCACCTCCGCCTACTGCGGCGGCGGCTGCCAG
AGCCAGTGCAGCGGCTGCGGCGGCGCCGGCGGCGGGGTGGCGTCCATCGTGTCCCGCGAC
CTCTTCGAGCGGTTCCTCCTCCATCGCAACGACGCGGCGTGCCTGGCCCGCGGGTTCTAC
ACCTACGACGCCTTCTTGGCCGCCGCCAGCGCGTTCCCGGCCTTCGGTACCACGGGGGAC
TTGGACACCCGGAAGCGGGAGGTGGCCGCCTTCTTCGGCCAGACTTCCCACGAGACCACC
GGCGGCTGGCCTACCGCGCCCGACGGCCCCTTCTCGTGGGGCTACTGCTTCAAGCAGGAG
CGGGGCTCGCCGCCGAGCTACTGCGACCAGAGCGCCGACTGGCCGTGCGCGCCCGGCAAG
CAGTACTATGGCCGCGGCCCCATCCAACTCACCCAATCAAGCAACTACAACTACGGACCG
GCGGGGCGGGCGATCGGGGTGGACCTGCTGAACAACCCGGACCTGGTGGCGTCGGACCCG
ACGGTGGCGTTCAAGACGGCGATTTGGTTCTGGATGACGACGCAGTCCAACAAGCCGTCG
TGCCACGACGTGATCACGGGGTTGTGGAGGCCGACGGCCAGGGACAGCGCGGCCGGACGG
GTACCCGGATACGGCGTGATCACCAACGTCATCAATGGCGGGATCGAATGCGGCAAGGGG
CAGAACGACAAGGTGGCCGACCGGATCGGGTTCTACAAGCGCTACTGTGACATCTTCGGC
ATCGGCTACGGGAATAACCTCGACTGCTACAACCAATTGTCGTTCAACATCGGGCTCGCG
GTACAGTGAGATCGTAAGGCTGGGTCCTCGGTTTATGCATGTGTGTGTGTGGATGTGATG
ATCACCCACAAATAAATAATCTTGGTAAGTATTTTATGACCAAATAAATGGATGTCCAGA
CCTTCCAGACATCTGTAATGGAGTACTCCCTCCGTTCCTAAATATATGTCTTTCTCAAGG
TTTCATTAATAGACTATATACGGATGCATATAGACATATTTTAAAGTATACAT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK369057	1388	0.0	144 - 1362	99	1210 / 1225	None	ABC03574 ABC03576 ABC03578 ABC07001 ABC39646
AK370783	1237	0.0	2 - 1119	99	1110 / 1124	CUST_274_PI415269222	ABC03574 ABC03576 ABC03578 ABC07001 ABC39646
MLOC_75969.2	737	0.0	48 - 737	98	684 / 696	None	ABC03574 ABC03576 ABC03578 ABC07001 ABC39646
MLOC_45209.1	978	0.0	424 - 974	99	548 / 551	None	ABC03576
MLOC_75969.1	1132	5e-83	953 - 1132	98	177 / 181	CUST_274_PI415269222 CUST_41518_PI390587928 CUST_41516_PI390587928	ABC03574 ABC03576 ABC03578 ABC07001 ABC39646
AK358661	1247	1e-153	301 - 1024	80	592 / 736	CUST_40543_PI390587928	ABC02517 ABC02518 ABC03576 ABC03578 ABC04173 ABC04174 ABC07001 ABC16814 ABC29038
MLOC_16320.1	771	3e-110	255 - 765	81	422 / 521	CUST_40543_PI390587928	ABC03576 ABC03578 ABC04173 ABC04174 ABC07001 ABC16814 ABC29038