barSeed - Barley Seed Development Database

Probe ABC06515

Source Contig ABC06515

barSeed

Links

Affymetrix Source Sequence (1228 bp)

>ABC06515 1228
ATCTATCTAGCTAGCTAGATAGCTAACACAGTTGATTCCATCGATAATGGCGGCGCGTGC
CATTGTCGTCCTGGTCTCGCTCGTCCTAGCGGTGGTCGCCGGCGGCGCGTCGGCGCAGCT
GTCGTCGGGCTTCTACTCGCGCTCGTGCCCGGGCATGCTCAAAGCCGTGCGCTCGGCGCT
GCACCCGGCGATCACCAGGGAGCGCCGCGTGGGCGCCTCCATCGTCCGCCTCTTCTTCCA
CGACTGCTTCGTCCAGGGCTGCGACGCCTCGCTGCTGCTGGACGACGCGCCGGGGCTGCG
CGGCGAGAAGAACGCCGCGCCCAACAAGAACTCCGTCAGGGGGTTCGAGGTCATCGACGC
CATCAAGGCGGCCGTCGAGAAGGAGTGTCCCGGCGTCGTCTCCTGCGCCGACGTCCTCGC
CGTCGCCGCCGAGGAGAGCGTCGTTTTCCTGGGTGGCCCGAGCTGGGAGGTGAAGATGGG
GCGGAGAGACTCGACGACGGCGAGCTTCACCGGCGCCGAGAACAACATCCCACCGCCCAC
GTCGGGGCTCGCAAACCTCACGTCCCTCTTCGCCGCGCAGGGGTTGTGCCAGAAGGACAT
GGTCGCGCTCTCAGGAGCGCACACGATCGGCCTGGCACGCTGCACAAACTTCCGGGACCA
CATCTACAACGACACCAACATCGACGACGGCTTCGCCAGGAGCCGCCAGTCAGGCTGCCC
TCGCACCGCCGGCTTCGGCGACAACAACCTGGCGCCGCTGGACCTGCAGACCCCGACCGT
CTTCGAGAACAACTACTACAAGAACCTCGTCCAGAAGAGGGCCCTCCTACACTCGGACCA
GGAGCTCTTAAACGGCGGCGCCGCCGACGCGCTGGTCCGGCAGTACGTCGGCAGCCAGAG
CTCATTCTTCAAGGACTTCGTGGTGGGGATGGTCAAGATGGGGGACATCGGGCCGCTGAC
GGGGTCCAGCGGACAGATCAGGAAGAACTGCAGGAGGATCAACTAAGAAAAGATCCTCCA
CTTTGAGCGCAGACAATTGCGAAATCCCTAGAAATGCAGCACAATCCGTAGCAATTCGGG
ATGTGTTTGATCGCGCCCAAGCTTGCAAGCAGCTTGTAGTTTCCTGTCGTTCGACTCTGT
TTCTGCAATTGTCAAACCAATGTACGTTGTGTCTGTTGGGTTAATAAAAGGCCTACCAGT
CTATAGCCAGGAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK375268	1236	0.0	26 - 1236	100	1211 / 1211	CUST_482_PI415269222 CUST_5156_PI390587928	ABC01871 ABC06515 ABC06516
MLOC_49954.1	913	0.0	7 - 913	100	907 / 907	None	ABC01871 ABC06515 ABC06516
MLOC_64966.1	1181	0.0	72 - 1044	91	886 / 977	CUST_15817_PI390587928	ABC06515 ABC06516
AK366435	1250	0.0	148 - 1058	83	756 / 915	CUST_26879_PI390587928 CUST_34667_PI390587928	ABC01871 ABC06515
MLOC_1396.1	1011	0.0	44 - 846	84	675 / 806	CUST_34667_PI390587928	ABC01871 ABC06515
MLOC_1396.3	1000	0.0	23 - 826	84	675 / 807	CUST_34667_PI390587928	ABC01871 ABC06515
MLOC_1396.2	1002	0.0	23 - 828	83	675 / 809	CUST_34667_PI390587928	ABC01871 ABC06515
MLOC_64683.1	416	2e-117	187 - 416	100	230 / 230	None	ABC06515
AK375528	1950	6e-102	496 - 996	80	417 / 519	None	ABC01871 ABC06515